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The map label for this gene is smpB [H]

Identifier: 116516450

GI number: 116516450

Start: 877781

End: 878248

Strand: Direct

Name: smpB [H]

Synonym: SPD_0863

Alternate gene names: 116516450

Gene position: 877781-878248 (Clockwise)

Preceding gene: 116515936

Following gene: 116515607

Centisome position: 42.9

GC content: 44.66

Gene sequence:

>468_bases
ATGGCAAAGGGCGAGGGAAAGGTCGTCGCACAAAATAAAAAGGCACGCCACGACTATACAATCGTAGATACGCTAGAGGC
AGGGATGGTCCTGACTGGAACTGAAATCAAGAGTGTACGAGCTGCTCGAATTAATCTCAAGGATGGCTTTGCTCAAGTGA
AAAATGGAGAAGTTTGGCTGAGTAATGTTCATATCGCGCCTTACGAAGAGGGCAATATCTGGAACCAGGAACCAGAACGT
CGTCGTAAACTCCTGCTCCATAAAAAGCAAATTCAAAAATTGGAACAAGAGACCAAAGGGACAGGAATGACCTTAGTTCC
CCTTAAGGTCTATATAAAAGATGGCTACGCTAAGCTTCTTTTAGGACTTGCCAAAGGGAAGCATGACTATGACAAACGGG
AGTCTATCAAACGTCGTGAGCAAAATCGAGATATCGCGCGTGTGATGAAAGCTGTTAATCAGCGATAA

Upstream 100 bases:

>100_bases
TCAGGACGCTCAAATGATAAGCGTAAGCATTCACAAAAAGACAAGAAGAAAAAAGGAAAGAAACCTTTTTACAAGGAAGT
AGCTAAGAAAGGAGCCAAGC

Downstream 100 bases:

>100_bases
AAAGAGGAATTGAAAATGGAAAAATTAGTTGCCTATAAACGCATGCCTTTGTGGAATAAACAAACAATGCCTGAAGCTGT
TCAGCAAAAGCACAATACAA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAKGEGKVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIAPYEEGNIWNQEPER
RRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKDGYAKLLLGLAKGKHDYDKRESIKRREQNRDIARVMKAVNQR

Sequences:

>Translated_155_residues
MAKGEGKVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIAPYEEGNIWNQEPER
RRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKDGYAKLLLGLAKGKHDYDKRESIKRREQNRDIARVMKAVNQR
>Mature_154_residues
AKGEGKVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIAPYEEGNIWNQEPERR
RKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKDGYAKLLLGLAKGKHDYDKRESIKRREQNRDIARVMKAVNQR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=144, Percent_Identity=39.5833333333333, Blast_Score=109, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17748; Mature: 17617

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGEGKVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWL
CCCCCCCEEECCCCCCCCEEEEEECCCCEEEECCHHHHHHHEEEECCCCHHCCCCCCEEE
SNVHIAPYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKDGYAKLL
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHH
LGLAKGKHDYDKRESIKRREQNRDIARVMKAVNQR
HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure 
AKGEGKVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWL
CCCCCCEEECCCCCCCCEEEEEECCCCEEEECCHHHHHHHEEEECCCCHHCCCCCCEEE
SNVHIAPYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKDGYAKLL
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHH
LGLAKGKHDYDKRESIKRREQNRDIARVMKAVNQR
HHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA