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The map label for this gene is ctsR [H]

Identifier: 116516436

GI number: 116516436

Start: 2002895

End: 2003353

Strand: Reverse

Name: ctsR [H]

Synonym: SPD_2023

Alternate gene names: 116516436

Gene position: 2003353-2002895 (Counterclockwise)

Preceding gene: 116517002

Following gene: 116516069

Centisome position: 97.91

GC content: 43.14

Gene sequence:

>459_bases
ATGAGATTTAAAAATACATCGGATCATATTGAGGCCTACATCAAGGCGATTTTAGATCAATCTGGTATCGTGGAGTTGCA
ACGGAGTCAGTTGGCAGATACCTTTCAGGTTGTTCCTAGTCAGATTAACTACGTGATCAAGACACGCTTTACGGAAAGTA
GAGGCTACTTGGTTGAAAGTAAGCGTGGTGGCGGAGGCTACATTCGTATAGGACGGATTGAGTTTTCTAGTCATCATGAA
ATGCTCCGGGAGCTGCTTTACTCGATTGGTGAGCGAGTCAGTCAAGAAATTTATGAGGATATTCTCCAGCTTTTGGTTGA
GCAGGAATTGATGACCAAGCAGGAGATGAATTTGCTAGTATCAGTAGCTTTGGATCGCGTTTTAGGAGAAGAAGCTCCAG
TTGTTCGAGCAAACATGCTACGTCAGGTCATACAAGAGGTAGATAGAAAAGGGAAGTAA

Upstream 100 bases:

>100_bases
AAGATTATCCTTTACCAGCGCCCTTTTTCTTTTAAAAATGAGAAAATTTCGGTATAATAGTCAAACAAGGTCAAGGTTTA
AAGAGAGAGGTGGGTTTGTT

Downstream 100 bases:

>100_bases
GATGAACTATTCAAAAGCATTGAATGAATGTATCGAAAGTGCCTACATGGTTGCTGGACATTTTGGAGCTCGTTATCTAG
AGTCTTGGCACTTGTTGATT

Product: transcriptional regulator CtsR

Products: NA

Alternate protein names: Class three stress gene repressor [H]

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MRFKNTSDHIEAYIKAILDQSGIVELQRSQLADTFQVVPSQINYVIKTRFTESRGYLVESKRGGGGYIRIGRIEFSSHHE
MLRELLYSIGERVSQEIYEDILQLLVEQELMTKQEMNLLVSVALDRVLGEEAPVVRANMLRQVIQEVDRKGK

Sequences:

>Translated_152_residues
MRFKNTSDHIEAYIKAILDQSGIVELQRSQLADTFQVVPSQINYVIKTRFTESRGYLVESKRGGGGYIRIGRIEFSSHHE
MLRELLYSIGERVSQEIYEDILQLLVEQELMTKQEMNLLVSVALDRVLGEEAPVVRANMLRQVIQEVDRKGK
>Mature_152_residues
MRFKNTSDHIEAYIKAILDQSGIVELQRSQLADTFQVVPSQINYVIKTRFTESRGYLVESKRGGGGYIRIGRIEFSSHHE
MLRELLYSIGERVSQEIYEDILQLLVEQELMTKQEMNLLVSVALDRVLGEEAPVVRANMLRQVIQEVDRKGK

Specific function: Controls the expression of the cellular protein quality control genes clpC, clpE and clpP. Acts as a repressor of these class III stress genes by binding to a directly repeated heptanucleotide operator sequence (A/GGTCAAA NAN A/GGTCAAA). After heat shock,

COG id: COG4463

COG function: function code K; Transcriptional repressor of class III stress genes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CtsR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008463 [H]

Pfam domain/function: PF05848 CtsR [H]

EC number: NA

Molecular weight: Translated: 17527; Mature: 17527

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKNTSDHIEAYIKAILDQSGIVELQRSQLADTFQVVPSQINYVIKTRFTESRGYLVES
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEC
KRGGGGYIRIGRIEFSSHHEMLRELLYSIGERVSQEIYEDILQLLVEQELMTKQEMNLLV
CCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVALDRVLGEEAPVVRANMLRQVIQEVDRKGK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFKNTSDHIEAYIKAILDQSGIVELQRSQLADTFQVVPSQINYVIKTRFTESRGYLVES
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEC
KRGGGGYIRIGRIEFSSHHEMLRELLYSIGERVSQEIYEDILQLLVEQELMTKQEMNLLV
CCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVALDRVLGEEAPVVRANMLRQVIQEVDRKGK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]