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The map label for this gene is rimM

Identifier: 116516249

GI number: 116516249

Start: 695940

End: 696458

Strand: Direct

Name: rimM

Synonym: SPD_0678

Alternate gene names: 116516249

Gene position: 695940-696458 (Clockwise)

Preceding gene: 116516366

Following gene: 116516895

Centisome position: 34.01

GC content: 40.27

Gene sequence:

>519_bases
ATGAACTACTTTAATGTTGGGAAAATCGTTAATACGCAGGGATTACAGGGTGAGATGCGAGTCTTGTCTGTGACGGATTT
TGCAGAAGAACGGTTTAAAAAAGGAGCTGAGCTGGCTTTGTTTGATGAAAAAGATCAGTTTGTCCAAACAGTGACCATCG
CTAGCCACCGTAAACAGAAGAACTTTGACATTATTAAATTCAAAGATATGTACCATATCAATACTATCGAAAAGTACAAG
GGATACAGTCTCAAGGTCGCTGAGGAAGATTTGAATGACCTAGACGATGGTGAATTTTACTATCACGAGATTATCGGTTT
GGAAGTCTATGAGGGTGATAGCTTGGTTGGAACCATCAAGGAAATCCTGCAACCAGGTGCTAATGATGTCTGGGTGGTCA
AACGAAAAGGCAAACGTGATTTGCTTTTACCTTATATCCCACCAGTGGTTCTCAATGTTGATATTCCAAATAAACGGGTC
GATGTGGAAATCTTAGAAGGGTTAGACGATGAAGATTGA

Upstream 100 bases:

>100_bases
GAATCACCATTATTTACAATGGTCAGAATCGGAAAAAATTGCGGCTATTATTCGAGAATTGTCAGAATAAGATGGAAAAA
AGGAGATTACAGGAGACAAG

Downstream 100 bases:

>100_bases
TATTTTAACCCTCTTTCCAGAGATGTTTTCTCCACTGGAGCACTCAATCGTTGGAAAGGCTCGAGAAAAAGGGCTCTTGG
ATATCCAGTATCATAATTTT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKNFDIIKFKDMYHINTIEKYK
GYSLKVAEEDLNDLDDGEFYYHEIIGLEVYEGDSLVGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRV
DVEILEGLDDED

Sequences:

>Translated_172_residues
MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKNFDIIKFKDMYHINTIEKYK
GYSLKVAEEDLNDLDDGEFYYHEIIGLEVYEGDSLVGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRV
DVEILEGLDDED
>Mature_172_residues
MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQKNFDIIKFKDMYHINTIEKYK
GYSLKVAEEDLNDLDDGEFYYHEIIGLEVYEGDSLVGTIKEILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRV
DVEILEGLDDED

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_STRP2 (Q04LC6)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816172.1
- ProteinModelPortal:   Q04LC6
- SMR:   Q04LC6
- STRING:   Q04LC6
- EnsemblBacteria:   EBSTRT00000018822
- GeneID:   4441529
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_0678
- eggNOG:   COG0806
- GeneTree:   EBGT00070000032173
- HOGENOM:   HBG703775
- OMA:   NDVYWIK
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19817; Mature: 19817

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQK
CCEECCCEEECCCCCCCCEEEEEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCC
NFDIIKFKDMYHINTIEKYKGYSLKVAEEDLNDLDDGEFYYHEIIGLEVYEGDSLVGTIK
CCCEEEEECEEEECCHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHH
EILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVEILEGLDDED
HHHCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCCEECHHEECCCCCCC
>Mature Secondary Structure
MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGAELALFDEKDQFVQTVTIASHRKQK
CCEECCCEEECCCCCCCCEEEEEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCC
NFDIIKFKDMYHINTIEKYKGYSLKVAEEDLNDLDDGEFYYHEIIGLEVYEGDSLVGTIK
CCCEEEEECEEEECCHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCHHHHHH
EILQPGANDVWVVKRKGKRDLLLPYIPPVVLNVDIPNKRVDVEILEGLDDED
HHHCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCCEECHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA