Click here to switch to the map view.

The map label for this gene is rpmE2 [H]

Identifier: 116515764

GI number: 116515764

Start: 1184141

End: 1184383

Strand: Direct

Name: rpmE2 [H]

Synonym: SPD_1154

Alternate gene names: 116515764

Gene position: 1184141-1184383 (Clockwise)

Preceding gene: 116516410

Following gene: 116516965

Centisome position: 57.87

GC content: 41.98

Gene sequence:

>243_bases
ATGAAAAAAGATATCCATCCAGAATATCGCCCAGTTGTCTTCATGGACACAACTACTGGTTACCAATTCCTTAGCGGTTC
AACAAAACGCTCTAACGAAACAGTTGAGTTCGAAGGCGAAACTTACCCATTGATCCGTGTGGAAATTTCATCAGACTCAC
ACCCATTCTACACTGGACGTCAAAAGTTCACTCAAGCAGATGGACGCGTGGATCGTTTCAACAAAAAATACGGTCTCAAA
TAA

Upstream 100 bases:

>100_bases
ACTGATAAAATACTTGCCAAACTTTTCAGAATCTGATAGACTAGTATGGTAACAATCTATGGCTCGCAAAGAGACCATGG
CAGAAAGGAAATATTGCAAA

Downstream 100 bases:

>100_bases
TGATAAGAGAACAGTTTCGGCTGTTCTTTTTTGTTTCTTGAAATCAACTGCTGTTTTCATGTTCCAGACTCATCTGTAGG
TTCGGTTTCCATGCTACTAG

Product: 50S ribosomal protein L31 type B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MKKDIHPEYRPVVFMDTTTGYQFLSGSTKRSNETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDRFNKKYGLK

Sequences:

>Translated_80_residues
MKKDIHPEYRPVVFMDTTTGYQFLSGSTKRSNETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDRFNKKYGLK
>Mature_80_residues
MKKDIHPEYRPVVFMDTTTGYQFLSGSTKRSNETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDRFNKKYGLK

Specific function: Unknown

COG id: COG0254

COG function: function code J; Ribosomal protein L31

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L31P family. Type B subfamily [H]

Homologues:

Organism=Escherichia coli, GI2367109, Length=78, Percent_Identity=46.1538461538462, Blast_Score=82, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002150 [H]

Pfam domain/function: PF01197 Ribosomal_L31 [H]

EC number: NA

Molecular weight: Translated: 9359; Mature: 9359

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS01143 RIBOSOMAL_L31

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKDIHPEYRPVVFMDTTTGYQFLSGSTKRSNETVEFEGETYPLIRVEISSDSHPFYTGR
CCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEECCC
QKFTQADGRVDRFNKKYGLK
CEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKDIHPEYRPVVFMDTTTGYQFLSGSTKRSNETVEFEGETYPLIRVEISSDSHPFYTGR
CCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEECCC
QKFTQADGRVDRFNKKYGLK
CEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA