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The map label for this gene is rbfA

Identifier: 116515755

GI number: 116515755

Start: 492486

End: 492836

Strand: Direct

Name: rbfA

Synonym: SPD_0483

Alternate gene names: 116515755

Gene position: 492486-492836 (Clockwise)

Preceding gene: 116516588

Following gene: 116516405

Centisome position: 24.07

GC content: 42.17

Gene sequence:

>351_bases
ATGGTAAATCATTTCCGTATAGATCGTGTGGGCATGGAAATCAAGCGTGAAGTCAATGAGATTTTGCAAAAGAAAGTCCG
TGATCCACGTGTCCAAGGTGTGACCATCACAGATGTTCAGATGCTGGGTGACTTGTCTGTTGCCAAGGTTTATTACACCA
TTTTGAGTAACCTTGCTTCGGATAACCAAAAAGCCCAAATCGGGCTTGAAAAAGCAACTGGTACCATCAAACGTGAACTT
GGTCGCAATTTGAAATTGTACAAAATCCCAGATTTGACCTTCGTCAAAGACGAGTCCATCGAGTATGGAAACAAGATTGA
CGAGATGCTACGCAATCTGGATAAGAACTAA

Upstream 100 bases:

>100_bases
TCAAATTGAACTTCGTTTCAATTTAAACTGAAAATCAAGAAGTTTAAAATAGCTAGGTCTGCTGGCCTAGCTTTTGGTTC
AAAGTAGAGAAAGGAATATC

Downstream 100 bases:

>100_bases
AGAAGAGGGGTTGCCCCTCTTTTTTGGTGGAGGAAAATAGGTTGAATTTGAAATGGAAAAATATTCTTTTATAATAGATT
GAAACTAGAATAGTACGCCT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MVNHFRIDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLASDNQKAQIGLEKATGTIKREL
GRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN

Sequences:

>Translated_116_residues
MVNHFRIDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLASDNQKAQIGLEKATGTIKREL
GRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN
>Mature_116_residues
MVNHFRIDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLASDNQKAQIGLEKATGTIKREL
GRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=119, Percent_Identity=36.1344537815126, Blast_Score=72, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_STRP2 (Q04LV9)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_815989.1
- ProteinModelPortal:   Q04LV9
- SMR:   Q04LV9
- STRING:   Q04LV9
- EnsemblBacteria:   EBSTRT00000019758
- GeneID:   4442410
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_0483
- eggNOG:   COG0858
- GeneTree:   EBGT00050000027412
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13351; Mature: 13351

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNHFRIDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLAS
CCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHHHC
DNQKAQIGLEKATGTIKRELGRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MVNHFRIDRVGMEIKREVNEILQKKVRDPRVQGVTITDVQMLGDLSVAKVYYTILSNLAS
CCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCHHHHHHHHHHHHHHHC
DNQKAQIGLEKATGTIKRELGRNLKLYKIPDLTFVKDESIEYGNKIDEMLRNLDKN
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA