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The map label for this gene is rpoZ

Identifier: 116515579

GI number: 116515579

Start: 1571082

End: 1571396

Strand: Reverse

Name: rpoZ

Synonym: SPD_1547

Alternate gene names: 116515579

Gene position: 1571396-1571082 (Counterclockwise)

Preceding gene: 116516658

Following gene: 116516961

Centisome position: 76.8

GC content: 40.0

Gene sequence:

>315_bases
ATGATGTTAAAACCCTCTATTGATACCTTGCTCGACAAGGTTCCTTCAAAATATTCACTCGTAATCTTGGAAGCAAAACG
TGCCCACGAATTGGAAGCAGGTGCCCCAGCAACTCAAGGTTTCAAGTCTGAAAAATCAACTCTTCGCGCTTTAGAAGAAA
TCGAATCAGGAAACGTTACAATTCACCCAGATCCAGAAGGAAAACGTGAAGCAGTGCGTCGCCGTATCGAAGAAGAAAAA
CGCCGCAAAGAAGAAGAAGAAAAGAAAATCAAAGAGCAAATTGCTAAAGAAAAAGAAGATGGTGAAAAAATTTAA

Upstream 100 bases:

>100_bases
AGCAGAACACTTCTGTGTGGATCGTGTCATTGGTCACTATCAGGAGATGTTACCAAAATCTCCAACTACCCGATAAAATT
TAGAAAATAGGTACAAGCAA

Downstream 100 bases:

>100_bases
GGTTGGGGGGACTCAATCTTATTTTTTCTATTGCAAGAATGTACTGACAAGGAGGAGGTGAGAAGATGGCCCTAGCTAAG
ATTATCGTAGATGTGCCCTT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVTIHPDPEGKREAVRRRIEEEK
RRKEEEEKKIKEQIAKEKEDGEKI

Sequences:

>Translated_104_residues
MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVTIHPDPEGKREAVRRRIEEEK
RRKEEEEKKIKEQIAKEKEDGEKI
>Mature_104_residues
MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVTIHPDPEGKREAVRRRIEEEK
RRKEEEEKKIKEQIAKEKEDGEKI

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_STRP2 (Q04J38)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_817000.1
- STRING:   Q04J38
- EnsemblBacteria:   EBSTRT00000020239
- GeneID:   4441196
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_1547
- eggNOG:   COG1758
- GeneTree:   EBGT00050000027338
- HOGENOM:   HBG742204
- OMA:   RDKERPT
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 11924; Mature: 11924

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVT
CCCCCCHHHHHHHCCCCEEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
IHPDPEGKREAVRRRIEEEKRRKEEEEKKIKEQIAKEKEDGEKI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMLKPSIDTLLDKVPSKYSLVILEAKRAHELEAGAPATQGFKSEKSTLRALEEIESGNVT
CCCCCCHHHHHHHCCCCEEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
IHPDPEGKREAVRRRIEEEKRRKEEEEKKIKEQIAKEKEDGEKI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA