Click here to switch to the map view.

The map label for this gene is rpe [H]

Identifier: 116515540

GI number: 116515540

Start: 1776269

End: 1776925

Strand: Reverse

Name: rpe [H]

Synonym: SPD_1780

Alternate gene names: 116515540

Gene position: 1776925-1776269 (Counterclockwise)

Preceding gene: 116516502

Following gene: 116516589

Centisome position: 86.84

GC content: 44.9

Gene sequence:

>657_bases
ATGTCTCAATACAAGATTGCTCCGTCAATTCTGGCAGCAGATTATGCCAACTTTGAACGTGAAATCAAACGTCTAGAAGC
AACTGGGGCAGAATATGCCCATATCGATATCATGGACAGTCATTTTGTACCGCAAATCAGTTTTGGTGCAGGTGTGGTCG
AGAGCCTTCGTCCTCATAGTAAGATGGTTTTCGATTGCCACTTGATGGTGTCAAACCCTGAGCATCATCTGGAAGATTTT
GCGCGTGCAGGTGCAGACATCATCAGTATCCATGTAGAAGCAACACCTCATATTCATGGCGCCCTCCAAAAAATTCGTTC
ACTCGGAGTTAAGCCTTCAGTCGTTATCAATCCTGGCACACCAGTTGAAGCCATCAAGCACGTCCTTCATCTAGTTGACC
AAGTTTTAGTCATGACGGTTAATCCAGGTTTTGGTGGGCAAGCCTTTCTGCCAGAAACCATGGATAAGGTTCGTGAGTTG
GTTGCTCTTCGTGAGGAAAAAGGTTTGAACTTTGAAATCGAAGTGGATGGTGGGATTGATGACCAAACTATTGCTCAAGC
CAAAGAAGCTGGTGCGACTGTTTTTGTAGCAGGTTCCTATGTCTTTAAGGGAGAAGTCAATGAGCGAGTACAAACTCTCA
GAAAACAACTGGACTAG

Upstream 100 bases:

>100_bases
TTCCGTTTTGACAATTACCTGCAATTCCTTAGTGAAATTGAAAATCGTAGAGAAACCTATAAAAAAGTCAGCAAAAAAAT
TCCAAAATAAGGAGAAACCT

Downstream 100 bases:

>100_bases
GGTTGCCGTTTTTGCAGGCGGAAACCGCGGTCATTATCGGACAGATTTTGATGCTTTTGTTGGGGTGGATCGAGGCTCGC
TCTGGGTCTTGGAAGAAGAC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHSKMVFDCHLMVSNPEHHLEDF
ARAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGTPVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVREL
VALREEKGLNFEIEVDGGIDDQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD

Sequences:

>Translated_218_residues
MSQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHSKMVFDCHLMVSNPEHHLEDF
ARAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGTPVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVREL
VALREEKGLNFEIEVDGGIDDQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD
>Mature_217_residues
SQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHSKMVFDCHLMVSNPEHHLEDFA
RAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGTPVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVRELV
ALREEKGLNFEIEVDGGIDDQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=218, Percent_Identity=42.2018348623853, Blast_Score=165, Evalue=3e-41,
Organism=Homo sapiens, GI219879828, Length=218, Percent_Identity=39.9082568807339, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI24307923, Length=157, Percent_Identity=36.3057324840764, Blast_Score=95, Evalue=5e-20,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=42.0091324200913, Blast_Score=184, Evalue=4e-48,
Organism=Escherichia coli, GI1790523, Length=199, Percent_Identity=42.713567839196, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1790754, Length=172, Percent_Identity=28.4883720930233, Blast_Score=89, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17552948, Length=204, Percent_Identity=44.6078431372549, Blast_Score=161, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=41.9642857142857, Blast_Score=168, Evalue=6e-43,
Organism=Drosophila melanogaster, GI24586301, Length=200, Percent_Identity=43, Blast_Score=162, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23945; Mature: 23813

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHS
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEECCCCHHHHHCCCCC
KMVFDCHLMVSNPEHHLEDFARAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGT
CEEEEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCC
PVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVRELVALREEKGLNFEIEVDGGID
CHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
DQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD
HHHHHHHHHCCCEEEEECCEEEECCHHHHHHHHHHHCC
>Mature Secondary Structure 
SQYKIAPSILAADYANFEREIKRLEATGAEYAHIDIMDSHFVPQISFGAGVVESLRPHS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEECCCCHHHHHCCCCC
KMVFDCHLMVSNPEHHLEDFARAGADIISIHVEATPHIHGALQKIRSLGVKPSVVINPGT
CEEEEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCC
PVEAIKHVLHLVDQVLVMTVNPGFGGQAFLPETMDKVRELVALREEKGLNFEIEVDGGID
CHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
DQTIAQAKEAGATVFVAGSYVFKGEVNERVQTLRKQLD
HHHHHHHHHCCCEEEEECCEEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA