Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
---|---|
Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is hscA [H]
Identifier: 116515304
GI number: 116515304
Start: 412428
End: 413927
Strand: Direct
Name: hscA [H]
Synonym: BCc_394
Alternate gene names: 116515304
Gene position: 412428-413927 (Clockwise)
Preceding gene: 116515303
Following gene: 116515305
Centisome position: 99.05
GC content: 19.07
Gene sequence:
>1500_bases ATGAAAAAAAAAACAATAATTGGAATTGACTTCGGAACAACAAACAGTTTAGTTTCTACAATATTAGAAAAAAAAATAAA AATAATTAATAATTTTAATAAAAAAAAGTTTTTTCCTTCAATTATTCATATATCTAATAAAAAAATATCAATAGGATGGA AAGCATTAAAATATTTATCTTCAGATGCTCAAAATACAATTTCATCAATTAAAAGATTTATCGGTATTTCTTATAATTCA ATAAAAAAAAACATAAATATTCCTAATATAATTTCTGAAAATAATAAAAAAGAATTAGTTTTTCATACAAAAATAGGAAA AATGAATGTTTCTTGTATAATTGAAAAATTTTTTGAATATATTAAAAAAAAAACAGAAAAAAAATTTAAAAATTCTATTC ACGGTGCTGTAATAACAATACCTGCATATTTCAATAATATACAAAAAAACATAGTAAGAAAAGCAGCAGAAACAGTTAAT TTAAAAATATTACGTTTATTAAACGAACCTACAGCAGCAGCAATTGCTTATGGATTAGAAAAAAAGAAAAAAGGAATTAT ATGTGTTTATGATTTAGGTGGAGGTACTTTTGACGTATCAATATTAAAAATATCAAAAGGAATTTTTGAAGTATTATCAA CTAATGGAAATTGTAAATTAGGTGGAGATGATTTTGATAAAAAATTAGTTTATCTATTAATTTCAAAAATAAAAAAAAAA CCTCTTTTAAACAAAATATTATTTAAAAAATTATTAATTATTGCTGAAAAAATAAAAATTCAATTAAGTAGAAAATCGTT AGTAAAAACAAAATTTTTAAATGAAAAAATTATATGTTCTAAAAAAGAATTTAATCAATTAATTTATCCATTTATTAAAA AAACATTAAAAATATTAAAAATTGCTTTAAATGATGCAAATATATCTAAAAAAAAAATAAAAGATATTATTTTAGTTGGT GGTTTTACATATATACCACTAATTCATGAATGTATTTATTCTTTTTTCAAAATAAAACCATTAACCTCTATAAATCCAAT GAAATTAGTGGCTAAAGGAGCTGGATTACATGCAAATTTTTTATATTTTAATAAAAAAAAAAACAGAAAAAAATCTATTT TATTACTTGATGTAATTCCATTGTCTATTGGAATAGAATTAGTAGGTGGTTTAATGGAAAAAATGATAAAAAAAAATACA AAAATTCCTACTGAAGTCATTAAATATTTTACAACTTTTAAAGATAATCAAACAGGATTTTGTATTAATATTTATCAAGG AGAAGATAAATATACAAAAAATTGTCAATTATTAACAAAATTTAAAATAAAAAATATTATACCTAAACCAGCTGGAAAAA TAAAGATAAAAGTAATTTTCCAAATAGATACAGATGGATTACTTTCTATTATTATAGAAGAAAAAAAATCAGATATCATT CATAACATAAAAATTGATACAACATATCAACAAAATAAATCAATTACTATAAATAAATAA
Upstream 100 bases:
>100_bases AAAATTGAAAAAGCAAACAAAATTCTTTTTCATATATCTTTTATTTATAAAATTCTAAATAAAGCAAAAAATTTTAAAAA AAAACTAAAATAGGTAAACA
Downstream 100 bases:
>100_bases TTTTTTAAAAATTAATTAATTAAAATATTTATATAATTAAAATTTCTACTTATATATTTAAAAATAAAATTTTTTCTTAA TAAATAAAATAGGAATATGT
Product: HscA
Products: NA
Alternate protein names: Hsc66 [H]
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MKKKTIIGIDFGTTNSLVSTILEKKIKIINNFNKKKFFPSIIHISNKKISIGWKALKYLSSDAQNTISSIKRFIGISYNS IKKNINIPNIISENNKKELVFHTKIGKMNVSCIIEKFFEYIKKKTEKKFKNSIHGAVITIPAYFNNIQKNIVRKAAETVN LKILRLLNEPTAAAIAYGLEKKKKGIICVYDLGGGTFDVSILKISKGIFEVLSTNGNCKLGGDDFDKKLVYLLISKIKKK PLLNKILFKKLLIIAEKIKIQLSRKSLVKTKFLNEKIICSKKEFNQLIYPFIKKTLKILKIALNDANISKKKIKDIILVG GFTYIPLIHECIYSFFKIKPLTSINPMKLVAKGAGLHANFLYFNKKKNRKKSILLLDVIPLSIGIELVGGLMEKMIKKNT KIPTEVIKYFTTFKDNQTGFCINIYQGEDKYTKNCQLLTKFKIKNIIPKPAGKIKIKVIFQIDTDGLLSIIIEEKKSDII HNIKIDTTYQQNKSITINK
Sequences:
>Translated_499_residues MKKKTIIGIDFGTTNSLVSTILEKKIKIINNFNKKKFFPSIIHISNKKISIGWKALKYLSSDAQNTISSIKRFIGISYNS IKKNINIPNIISENNKKELVFHTKIGKMNVSCIIEKFFEYIKKKTEKKFKNSIHGAVITIPAYFNNIQKNIVRKAAETVN LKILRLLNEPTAAAIAYGLEKKKKGIICVYDLGGGTFDVSILKISKGIFEVLSTNGNCKLGGDDFDKKLVYLLISKIKKK PLLNKILFKKLLIIAEKIKIQLSRKSLVKTKFLNEKIICSKKEFNQLIYPFIKKTLKILKIALNDANISKKKIKDIILVG GFTYIPLIHECIYSFFKIKPLTSINPMKLVAKGAGLHANFLYFNKKKNRKKSILLLDVIPLSIGIELVGGLMEKMIKKNT KIPTEVIKYFTTFKDNQTGFCINIYQGEDKYTKNCQLLTKFKIKNIIPKPAGKIKIKVIFQIDTDGLLSIIIEEKKSDII HNIKIDTTYQQNKSITINK >Mature_499_residues MKKKTIIGIDFGTTNSLVSTILEKKIKIINNFNKKKFFPSIIHISNKKISIGWKALKYLSSDAQNTISSIKRFIGISYNS IKKNINIPNIISENNKKELVFHTKIGKMNVSCIIEKFFEYIKKKTEKKFKNSIHGAVITIPAYFNNIQKNIVRKAAETVN LKILRLLNEPTAAAIAYGLEKKKKGIICVYDLGGGTFDVSILKISKGIFEVLSTNGNCKLGGDDFDKKLVYLLISKIKKK PLLNKILFKKLLIIAEKIKIQLSRKSLVKTKFLNEKIICSKKEFNQLIYPFIKKTLKILKIALNDANISKKKIKDIILVG GFTYIPLIHECIYSFFKIKPLTSINPMKLVAKGAGLHANFLYFNKKKNRKKSILLLDVIPLSIGIELVGGLMEKMIKKNT KIPTEVIKYFTTFKDNQTGFCINIYQGEDKYTKNCQLLTKFKIKNIIPKPAGKIKIKVIFQIDTDGLLSIIIEEKKSDII HNIKIDTTYQQNKSITINK
Specific function: Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by hscB. Involved in the maturation of iscU [H]
COG id: COG0443
COG function: function code O; Molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heat shock protein 70 family [H]
Homologues:
Organism=Homo sapiens, GI24234688, Length=510, Percent_Identity=34.9019607843137, Blast_Score=305, Evalue=7e-83, Organism=Homo sapiens, GI124256496, Length=504, Percent_Identity=36.9047619047619, Blast_Score=304, Evalue=1e-82, Organism=Homo sapiens, GI167466173, Length=504, Percent_Identity=36.3095238095238, Blast_Score=303, Evalue=3e-82, Organism=Homo sapiens, GI194248072, Length=504, Percent_Identity=36.3095238095238, Blast_Score=303, Evalue=3e-82, Organism=Homo sapiens, GI13676857, Length=496, Percent_Identity=37.7016129032258, Blast_Score=303, Evalue=3e-82, Organism=Homo sapiens, GI5729877, Length=496, Percent_Identity=37.2983870967742, Blast_Score=301, Evalue=7e-82, Organism=Homo sapiens, GI34419635, Length=502, Percent_Identity=34.0637450199203, Blast_Score=298, Evalue=6e-81, Organism=Homo sapiens, GI16507237, Length=512, Percent_Identity=35.546875, Blast_Score=288, Evalue=6e-78, Organism=Homo sapiens, GI24234686, Length=469, Percent_Identity=37.1002132196162, Blast_Score=280, Evalue=3e-75, Organism=Homo sapiens, GI48928056, Length=414, Percent_Identity=29.4685990338164, Blast_Score=155, Evalue=7e-38, Organism=Homo sapiens, GI31541941, Length=500, Percent_Identity=25.4, Blast_Score=136, Evalue=4e-32, Organism=Homo sapiens, GI42544159, Length=500, Percent_Identity=25.2, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI82880658, Length=514, Percent_Identity=23.3463035019455, Blast_Score=126, Evalue=5e-29, Organism=Homo sapiens, GI38327039, Length=524, Percent_Identity=22.5190839694656, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI195976805, Length=271, Percent_Identity=26.9372693726937, Blast_Score=76, Evalue=7e-14, Organism=Homo sapiens, GI5453832, Length=271, Percent_Identity=26.9372693726937, Blast_Score=76, Evalue=7e-14, Organism=Escherichia coli, GI1788875, Length=494, Percent_Identity=39.0688259109312, Blast_Score=398, Evalue=1e-112, Organism=Escherichia coli, GI1786196, Length=498, Percent_Identity=36.7469879518072, Blast_Score=311, Evalue=6e-86, Organism=Escherichia coli, GI1786870, Length=499, Percent_Identity=29.2585170340681, Blast_Score=216, Evalue=3e-57, Organism=Caenorhabditis elegans, GI17562024, Length=496, Percent_Identity=35.8870967741936, Blast_Score=301, Evalue=4e-82, Organism=Caenorhabditis elegans, GI17541098, Length=497, Percent_Identity=36.4185110663984, Blast_Score=301, Evalue=5e-82, Organism=Caenorhabditis elegans, GI17534015, Length=505, Percent_Identity=36.2376237623762, Blast_Score=296, Evalue=2e-80, Organism=Caenorhabditis elegans, GI17534013, Length=505, Percent_Identity=36.2376237623762, Blast_Score=296, Evalue=2e-80, Organism=Caenorhabditis elegans, GI17568549, Length=511, Percent_Identity=36.7906066536204, Blast_Score=291, Evalue=5e-79, Organism=Caenorhabditis elegans, GI17507981, Length=504, Percent_Identity=36.1111111111111, Blast_Score=290, Evalue=1e-78, Organism=Caenorhabditis elegans, GI17534771, Length=496, Percent_Identity=36.8951612903226, Blast_Score=282, Evalue=3e-76, Organism=Caenorhabditis elegans, GI71984444, Length=491, Percent_Identity=30.9572301425662, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI32564617, Length=379, Percent_Identity=31.6622691292876, Blast_Score=158, Evalue=5e-39, Organism=Caenorhabditis elegans, GI17552432, Length=391, Percent_Identity=23.0179028132992, Blast_Score=106, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17536481, Length=256, Percent_Identity=26.953125, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996592, Length=300, Percent_Identity=25.6666666666667, Blast_Score=72, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71996597, Length=300, Percent_Identity=25.6666666666667, Blast_Score=72, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322426, Length=504, Percent_Identity=38.4920634920635, Blast_Score=300, Evalue=3e-82, Organism=Saccharomyces cerevisiae, GI6322505, Length=507, Percent_Identity=34.7140039447732, Blast_Score=300, Evalue=5e-82, Organism=Saccharomyces cerevisiae, GI6319396, Length=488, Percent_Identity=34.8360655737705, Blast_Score=297, Evalue=3e-81, Organism=Saccharomyces cerevisiae, GI6323004, Length=487, Percent_Identity=35.523613963039, Blast_Score=293, Evalue=3e-80, Organism=Saccharomyces cerevisiae, GI6320950, Length=488, Percent_Identity=35.2459016393443, Blast_Score=292, Evalue=7e-80, Organism=Saccharomyces cerevisiae, GI6323401, Length=507, Percent_Identity=34.5167652859961, Blast_Score=291, Evalue=1e-79, Organism=Saccharomyces cerevisiae, GI6319314, Length=487, Percent_Identity=35.3182751540041, Blast_Score=290, Evalue=4e-79, Organism=Saccharomyces cerevisiae, GI6320805, Length=485, Percent_Identity=34.020618556701, Blast_Score=287, Evalue=3e-78, Organism=Saccharomyces cerevisiae, GI6324120, Length=499, Percent_Identity=35.4709418837675, Blast_Score=275, Evalue=2e-74, Organism=Saccharomyces cerevisiae, GI6319972, Length=499, Percent_Identity=35.4709418837675, Blast_Score=274, Evalue=3e-74, Organism=Saccharomyces cerevisiae, GI6325151, Length=512, Percent_Identity=23.6328125, Blast_Score=121, Evalue=3e-28, Organism=Saccharomyces cerevisiae, GI6321855, Length=458, Percent_Identity=24.8908296943231, Blast_Score=117, Evalue=6e-27, Organism=Saccharomyces cerevisiae, GI6319646, Length=385, Percent_Identity=24.9350649350649, Blast_Score=114, Evalue=3e-26, Organism=Drosophila melanogaster, GI24653595, Length=508, Percent_Identity=35.2362204724409, Blast_Score=308, Evalue=7e-84, Organism=Drosophila melanogaster, GI24647034, Length=504, Percent_Identity=36.7063492063492, Blast_Score=305, Evalue=5e-83, Organism=Drosophila melanogaster, GI24647038, Length=504, Percent_Identity=36.7063492063492, Blast_Score=305, Evalue=5e-83, Organism=Drosophila melanogaster, GI24647036, Length=504, Percent_Identity=36.7063492063492, Blast_Score=305, Evalue=5e-83, Organism=Drosophila melanogaster, GI17737967, Length=504, Percent_Identity=36.7063492063492, Blast_Score=305, Evalue=5e-83, Organism=Drosophila melanogaster, GI28571721, Length=504, Percent_Identity=36.7063492063492, Blast_Score=305, Evalue=5e-83, Organism=Drosophila melanogaster, GI28571719, Length=504, Percent_Identity=36.7063492063492, Blast_Score=305, Evalue=5e-83, Organism=Drosophila melanogaster, GI24646318, Length=504, Percent_Identity=36.5079365079365, Blast_Score=301, Evalue=7e-82, Organism=Drosophila melanogaster, GI24646324, Length=504, Percent_Identity=36.5079365079365, Blast_Score=301, Evalue=7e-82, Organism=Drosophila melanogaster, GI24646322, Length=504, Percent_Identity=36.5079365079365, Blast_Score=301, Evalue=7e-82, Organism=Drosophila melanogaster, GI24646137, Length=504, Percent_Identity=36.5079365079365, Blast_Score=300, Evalue=1e-81, Organism=Drosophila melanogaster, GI24646135, Length=504, Percent_Identity=36.5079365079365, Blast_Score=300, Evalue=1e-81, Organism=Drosophila melanogaster, GI28571678, Length=504, Percent_Identity=36.3095238095238, Blast_Score=299, Evalue=3e-81, Organism=Drosophila melanogaster, GI17647515, Length=499, Percent_Identity=35.4709418837675, Blast_Score=298, Evalue=4e-81, Organism=Drosophila melanogaster, GI17738165, Length=501, Percent_Identity=36.127744510978, Blast_Score=291, Evalue=6e-79, Organism=Drosophila melanogaster, GI24641406, Length=499, Percent_Identity=35.8717434869739, Blast_Score=289, Evalue=3e-78, Organism=Drosophila melanogaster, GI24641408, Length=499, Percent_Identity=35.8717434869739, Blast_Score=289, Evalue=3e-78, Organism=Drosophila melanogaster, GI24641402, Length=499, Percent_Identity=35.8717434869739, Blast_Score=289, Evalue=3e-78, Organism=Drosophila melanogaster, GI24641404, Length=499, Percent_Identity=35.8717434869739, Blast_Score=289, Evalue=3e-78, Organism=Drosophila melanogaster, GI17737941, Length=490, Percent_Identity=35.5102040816327, Blast_Score=280, Evalue=1e-75, Organism=Drosophila melanogaster, GI24663992, Length=370, Percent_Identity=38.9189189189189, Blast_Score=270, Evalue=2e-72, Organism=Drosophila melanogaster, GI24663988, Length=370, Percent_Identity=38.9189189189189, Blast_Score=270, Evalue=2e-72, Organism=Drosophila melanogaster, GI24664047, Length=380, Percent_Identity=25.2631578947368, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24664044, Length=380, Percent_Identity=25.2631578947368, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI21357475, Length=380, Percent_Identity=25.2631578947368, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI21355965, Length=219, Percent_Identity=24.6575342465753, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI281359726, Length=399, Percent_Identity=21.0526315789474, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI20128923, Length=399, Percent_Identity=21.0526315789474, Blast_Score=69, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018181 - InterPro: IPR001023 - InterPro: IPR013126 - InterPro: IPR010236 [H]
Pfam domain/function: PF00012 HSP70 [H]
EC number: NA
Molecular weight: Translated: 56805; Mature: 56805
Theoretical pI: Translated: 10.69; Mature: 10.69
Prosite motif: PS00329 HSP70_2 ; PS01036 HSP70_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKTIIGIDFGTTNSLVSTILEKKIKIINNFNKKKFFPSIIHISNKKISIGWKALKYLS CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHCCCHHEEECCCEEEEHHHHHHHHH SDAQNTISSIKRFIGISYNSIKKNINIPNIISENNKKELVFHTKIGKMNVSCIIEKFFEY CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH IKKKTEKKFKNSIHGAVITIPAYFNNIQKNIVRKAAETVNLKILRLLNEPTAAAIAYGLE HHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHEEEHHCCCHHHHHHHHHH KKKKGIICVYDLGGGTFDVSILKISKGIFEVLSTNGNCKLGGDDFDKKLVYLLISKIKKK HCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCC PLLNKILFKKLLIIAEKIKIQLSRKSLVKTKFLNEKIICSKKEFNQLIYPFIKKTLKILK HHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCHHEECHHHHHHHHHHHHHHHHHHHH IALNDANISKKKIKDIILVGGFTYIPLIHECIYSFFKIKPLTSINPMKLVAKGAGLHANF HHCCCCCCCHHHHCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCEEEE LYFNKKKNRKKSILLLDVIPLSIGIELVGGLMEKMIKKNTKIPTEVIKYFTTFKDNQTGF EEEECCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEE CINIYQGEDKYTKNCQLLTKFKIKNIIPKPAGKIKIKVIFQIDTDGLLSIIIEEKKSDII EEEEEECCCCCCCCCCEEEEEHHHHCCCCCCCEEEEEEEEEECCCCEEEHEEHHHHCCCE HNIKIDTTYQQNKSITINK EEEEEEEEECCCCCEEECC >Mature Secondary Structure MKKKTIIGIDFGTTNSLVSTILEKKIKIINNFNKKKFFPSIIHISNKKISIGWKALKYLS CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHCCCHHEEECCCEEEEHHHHHHHHH SDAQNTISSIKRFIGISYNSIKKNINIPNIISENNKKELVFHTKIGKMNVSCIIEKFFEY CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH IKKKTEKKFKNSIHGAVITIPAYFNNIQKNIVRKAAETVNLKILRLLNEPTAAAIAYGLE HHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHEEEHHCCCHHHHHHHHHH KKKKGIICVYDLGGGTFDVSILKISKGIFEVLSTNGNCKLGGDDFDKKLVYLLISKIKKK HCCCCEEEEEECCCCEEEEEEEEHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCC PLLNKILFKKLLIIAEKIKIQLSRKSLVKTKFLNEKIICSKKEFNQLIYPFIKKTLKILK HHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCHHEECHHHHHHHHHHHHHHHHHHHH IALNDANISKKKIKDIILVGGFTYIPLIHECIYSFFKIKPLTSINPMKLVAKGAGLHANF HHCCCCCCCHHHHCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCEEEE LYFNKKKNRKKSILLLDVIPLSIGIELVGGLMEKMIKKNTKIPTEVIKYFTTFKDNQTGF EEEECCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEE CINIYQGEDKYTKNCQLLTKFKIKNIIPKPAGKIKIKVIFQIDTDGLLSIIIEEKKSDII EEEEEECCCCCCCCCCEEEEEHHHHCCCCCCCEEEEEEEEEECCCCEEEHEEHHHHCCCE HNIKIDTTYQQNKSITINK EEEEEEEEECCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA