| Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
|---|---|
| Accession | NC_008513 |
| Length | 416,380 |
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The map label for this gene is sbcB [H]
Identifier: 116515281
GI number: 116515281
Start: 387547
End: 388974
Strand: Reverse
Name: sbcB [H]
Synonym: BCc_364
Alternate gene names: 116515281
Gene position: 388974-387547 (Counterclockwise)
Preceding gene: 116515282
Following gene: 116515274
Centisome position: 93.42
GC content: 16.18
Gene sequence:
>1428_bases ATTTGTGAATATTTTTCAAAAAAAAAAATTATATTTTATGATTATGAAACTTTCGGAAAAAACGTTGCTTTAGATAAAGT TTCTCAATTTTGTAGTATTGAAACAGATAATAAATTTTCTTATATTATAAAAAAAACCATTTTATTTTGCTACCCCCCTA TTGATTATTTACCTGATCCAGAAGCTATTTTAATTACAAAAATTTTACCTCAGTATACTTATAAATATGGTTTAAATGAG TATTTTCTTTCTAAAAAAATACATGATATTTTTTCACAAAAAAATATATGTATTATTGGATATAATAATATTAATTTTGA TAATTTAATTACTCGTAATATTTTTTATAGAAATTTATTTGATCCTTATGAATGGAGTTGGAAAAATAATAATTTTAGTT GGGATATATTAAATATTTTACGTGCGTTTTATATTTTTTTACCAAAATCTATGTGTTGGTATTATAATAGTAATGGAACA GTTAGTTTTAAATTATCTGATATTACGTTAGTTAATAATATCAAACATATTCATATTCATGATGCATATTCTGATGTATA TGCAACTTTTTTAATTACAAAATATTTATTTTCTAAATATAAAAATTTTTTTTTATATTTATATATGATTTCTAAAAAAA AATATATATCTTCTTTTTTATTGAATAATATAAATAAACCATTTTTTTATATTTCTAGTTTTTTCGGATCTATTAATTAT AATTTTGGTTGTATAATGTATATTGGTTTACATCCTTTATATAAGAATAATATAGTTATTTTTGATTTATCTAGTGATTT TAAAAAAATATTTAATTTATATAAAAAATATTCTACATGTTTAATTTCAATAAAAAAATTATTTAATGTTGGTATTAAAG TTGTTTCAATAAGCAAATCACCTCTTTTTTTTTCTTATAATTCAGTTTCCTTGAAACATTGTATTAGATTAAATATTGAT TATTTAAAATGTCAAAAAAATTTTTTTTTATTAAAAAATAATTTTTTAATAAAAAATTGGATTATATCGTGTTTTTCATA TAAGAAAAAAGAAAAAATAAATGATATTGATTTAATGTTATATAATAATTTTTTTTTAAATTCTGATCGTTGTTTATTAT CTTTTATTCATAAAAATGAACCTAAAAAATGGATGGGCTGGAGTGCTAATTTTTTAGATAACAGAATTAAAAAATTATTT TTTCGTTTAAAAGCAAGAAATTTTATTAAATTATTAAATTTTAATGAAATAAAAAAATGGCAATTTTATTGTAAAAATAA AATTAATTTTATTAAATTAGAAGAATATTTTGAAAAGATTAAAAAATTTCAATTAAAATTTAATAAAAATGATAAGAATT TTATTCTACTGGAAGATTTATTTAAATATATAAAAAGAAATATTAATTATATAAATAATTTAATTTAA
Upstream 100 bases:
>100_bases ATGTCACTGGTTCGAGTCCAGTCGGGGGAGAAAAAATATTATATGTAATTTTATTATAAGTTACTTAGTTAATATTTCTT GATATTAAGGATAATAAAAA
Downstream 100 bases:
>100_bases TTTTTTTTTTTTTTGAAAAAAAAATTTTTCATTTTTTTTTCTAAAAATATTCTATCTTTTTCAATAAACATATTTAATTT TTTTTCATTTATTATTTTTG
Product: SbcB
Products: NA
Alternate protein names: Exonuclease I; DNA deoxyribophosphodiesterase; dRPase [H]
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILITKILPQYTYKYGLNE YFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEWSWKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGT VSFKLSDITLVNNIKHIHIHDAYSDVYATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINY NFGCIMYIGLHPLYKNNIVIFDLSSDFKKIFNLYKKYSTCLISIKKLFNVGIKVVSISKSPLFFSYNSVSLKHCIRLNID YLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLMLYNNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLF FRLKARNFIKLLNFNEIKKWQFYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIKRNINYINNLI
Sequences:
>Translated_475_residues MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILITKILPQYTYKYGLNE YFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEWSWKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGT VSFKLSDITLVNNIKHIHIHDAYSDVYATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINY NFGCIMYIGLHPLYKNNIVIFDLSSDFKKIFNLYKKYSTCLISIKKLFNVGIKVVSISKSPLFFSYNSVSLKHCIRLNID YLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLMLYNNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLF FRLKARNFIKLLNFNEIKKWQFYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIKRNINYINNLI >Mature_475_residues MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILITKILPQYTYKYGLNE YFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEWSWKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGT VSFKLSDITLVNNIKHIHIHDAYSDVYATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINY NFGCIMYIGLHPLYKNNIVIFDLSSDFKKIFNLYKKYSTCLISIKKLFNVGIKVVSISKSPLFFSYNSVSLKHCIRLNID YLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLMLYNNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLF FRLKARNFIKLLNFNEIKKWQFYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIKRNINYINNLI
Specific function: Also functions as a DNA deoxyribophosphodiesterase that releases deoxyribose-phosphate moieties following the cleavage DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease AP lyase [H]
COG id: COG2925
COG function: function code L; Exonuclease I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788321, Length=461, Percent_Identity=32.5379609544469, Blast_Score=322, Evalue=4e-89,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013620 - InterPro: IPR013520 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF08411 Exonuc_X-T_C [H]
EC number: =3.1.11.1 [H]
Molecular weight: Translated: 57605; Mature: 57605
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDP CCCCCCCCCEEEEEHHHCCCCEEHHHHHHHHCCCCCCCHHHHHHHHEEEEECCCCCCCCC EAILITKILPQYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLF CEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC DPYEWSWKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIH CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEEEECCEEEEEEE DAYSDVYATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINY CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHCCCCCCEEHHHHHCCCCC NFGCIMYIGLHPLYKNNIVIFDLSSDFKKIFNLYKKYSTCLISIKKLFNVGIKVVSISKS CCEEEEEEECCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC PLFFSYNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLML CEEEEECCCCEEHHEEECCCEEEECCCEEEEECCEEHHHHHHHHHHHHHHCCCCCEEEEE YNNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNFNEIKKW EECEEECCCHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH QFYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIKRNINYINNLI HHHHCCCCCEEEHHHHHHHHHHEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDP CCCCCCCCCEEEEEHHHCCCCEEHHHHHHHHCCCCCCCHHHHHHHHEEEEECCCCCCCCC EAILITKILPQYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLF CEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC DPYEWSWKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIH CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEEEECCEEEEEEE DAYSDVYATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINY CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHCCCCCCEEHHHHHCCCCC NFGCIMYIGLHPLYKNNIVIFDLSSDFKKIFNLYKKYSTCLISIKKLFNVGIKVVSISKS CCEEEEEEECCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC PLFFSYNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLML CEEEEECCCCEEHHEEECCCEEEECCCEEEEECCEEHHHHHHHHHHHHHHCCCCCEEEEE YNNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNFNEIKKW EECEEECCCHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH QFYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIKRNINYINNLI HHHHCCCCCEEEHHHHHHHHHHEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3539937; 9097040; 9278503; 1329027 [H]