Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is aroK [H]
Identifier: 116515271
GI number: 116515271
Start: 378261
End: 378800
Strand: Reverse
Name: aroK [H]
Synonym: BCc_353
Alternate gene names: 116515271
Gene position: 378800-378261 (Counterclockwise)
Preceding gene: 116515272
Following gene: 116515270
Centisome position: 90.97
GC content: 21.3
Gene sequence:
>540_bases ATGTATATAAAAAAAAAAAAAAATATTTTTTTAGTAGGGCCAATGGGTGCAGGAAAAAGTACTATTGGACGTTTTTTAGC TAAACAATTAAACATGAAATTTTATGATTCTGATATCGAAATTGAGAGAAAAGCTGGGGCAAATATAGATTGGATTTTTG ATGTTGAAGGCGAATCAAAATTTCGTATTAGAGAAGAAAAGATGATTAATAAATTAACTAATAAATTTGGTGTAGTATTA GCTACTGGTGGAGGATCTATTTTATCATTAAAATCAAGAAATTTTTTAATTAATAGAGGTTTTGTAATTTATTTACGTAC TTCTATTGATGAACAATTAATTAGAACGAATATAGATAAAAATAGACCATTATTATCAAATAATATTAATAAAAATAAAA AATTATTAAGTCAATTATTTAAAATTCGAGATCCATTATATAGAAGTATATCTAATTTTATAGTAGATACTAGTAATAAA AAAGTAAAATTTATTCTATCCAAAATTTTAAGTTATATTTCAAATTTAAATTTTATTTAA
Upstream 100 bases:
>100_bases AATATTTAATATATTTGATATTATTAATATTTTTAAAAATATTTTTTACATAAAAATATTATAAAATATATCATTATTTT TTTGTTCTAGGAATATTTAT
Downstream 100 bases:
>100_bases AAAAAATACTAATATTAAAAATATTAAATTTCTTAAATTATATTAAAACTGAGTTTATTATGATAGAAACAATACATGTT AATTTAAATAATTATAGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: SK [H]
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MYIKKKKNIFLVGPMGAGKSTIGRFLAKQLNMKFYDSDIEIERKAGANIDWIFDVEGESKFRIREEKMINKLTNKFGVVL ATGGGSILSLKSRNFLINRGFVIYLRTSIDEQLIRTNIDKNRPLLSNNINKNKKLLSQLFKIRDPLYRSISNFIVDTSNK KVKFILSKILSYISNLNFI
Sequences:
>Translated_179_residues MYIKKKKNIFLVGPMGAGKSTIGRFLAKQLNMKFYDSDIEIERKAGANIDWIFDVEGESKFRIREEKMINKLTNKFGVVL ATGGGSILSLKSRNFLINRGFVIYLRTSIDEQLIRTNIDKNRPLLSNNINKNKKLLSQLFKIRDPLYRSISNFIVDTSNK KVKFILSKILSYISNLNFI >Mature_179_residues MYIKKKKNIFLVGPMGAGKSTIGRFLAKQLNMKFYDSDIEIERKAGANIDWIFDVEGESKFRIREEKMINKLTNKFGVVL ATGGGSILSLKSRNFLINRGFVIYLRTSIDEQLIRTNIDKNRPLLSNNINKNKKLLSQLFKIRDPLYRSISNFIVDTSNK KVKFILSKILSYISNLNFI
Specific function: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate [H]
COG id: COG0703
COG function: function code E; Shikimate kinase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate kinase family [H]
Homologues:
Organism=Escherichia coli, GI87082255, Length=173, Percent_Identity=52.6011560693642, Blast_Score=194, Evalue=3e-51, Organism=Escherichia coli, GI1786587, Length=172, Percent_Identity=30.8139534883721, Blast_Score=92, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6320332, Length=156, Percent_Identity=29.4871794871795, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000623 - InterPro: IPR023000 [H]
Pfam domain/function: PF01202 SKI [H]
EC number: =2.7.1.71 [H]
Molecular weight: Translated: 20632; Mature: 20632
Theoretical pI: Translated: 10.91; Mature: 10.91
Prosite motif: PS01128 SHIKIMATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIKKKKNIFLVGPMGAGKSTIGRFLAKQLNMKFYDSDIEIERKAGANIDWIFDVEGESK CCEECCCCEEEEECCCCCHHHHHHHHHHHCCCEEECCCCEEECCCCCCEEEEEEECCCCC FRIREEKMINKLTNKFGVVLATGGGSILSLKSRNFLINRGFVIYLRTSIDEQLIRTNIDK EEEHHHHHHHHHHHHCEEEEEECCCCEEEEECCCEEEECCEEEEEECCHHHHHHHHCCCC NRPLLSNNINKNKKLLSQLFKIRDPLYRSISNFIVDTSNKKVKFILSKILSYISNLNFI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MYIKKKKNIFLVGPMGAGKSTIGRFLAKQLNMKFYDSDIEIERKAGANIDWIFDVEGESK CCEECCCCEEEEECCCCCHHHHHHHHHHHCCCEEECCCCEEECCCCCCEEEEEEECCCCC FRIREEKMINKLTNKFGVVLATGGGSILSLKSRNFLINRGFVIYLRTSIDEQLIRTNIDK EEEHHHHHHHHHHHHCEEEEEECCCCEEEEECCCEEEECCEEEEEECCHHHHHHHHCCCC NRPLLSNNINKNKKLLSQLFKIRDPLYRSISNFIVDTSNKKVKFILSKILSYISNLNFI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA