Definition Buchnera aphidicola str. Cc (Cinara cedri), complete genome.
Accession NC_008513
Length 416,380

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The map label for this gene is rpe [H]

Identifier: 116515269

GI number: 116515269

Start: 376327

End: 376989

Strand: Reverse

Name: rpe [H]

Synonym: BCc_351

Alternate gene names: 116515269

Gene position: 376989-376327 (Counterclockwise)

Preceding gene: 116515270

Following gene: 116515268

Centisome position: 90.54

GC content: 22.32

Gene sequence:

>663_bases
ATGAAAAAATTTTTAATTATTCCATCAATTTTATCTGCAGATTTTTGTTATTTAGGAAATGAATTACATAAGCTTTTACG
TGCTGGTTGTCAATTAATTCATTTTGATTTAATGGATAATCATTATGTTCCAAATTTTACTATTGGTCCTATGATATTAA
AATCTGTTAAAAATAATAATATTCCCGTTTTTTTTGATGTTCCTTTAATGGCTTCTTCCGGTGATTCTTTAATTCCTTTA
TTTGCTGATTTAAATGTTAAATTTATTACTATTCATCCTGAAACAACCAATCCTTTACCTAGAACTATACCATTAATTAA
AAAAATAGGATGTAACGTTGGTTTAGCTTTAAATCCCTCTACTTCCTTAAATTGTCTTGATTATATTATTAAAGAATTAG
ATTTAATTTTAGTAATGGCTGTTAATCCCGGTTTTGGAGGTCAAGTTTTTTTAAAAAATACCTTTAAAAAAATTAAACCT
ATACGTTATTTAATTAATAAAAAAAAAAGTAATATTTTATTATCTGTAGATGGTGGAGTAAATCAATCAAATATTTTAAA
AATTATTGATTCTGGAGCAGATTATTTAGTAATTGGAAGTGCAATTTTTAATTTTAAAAATTATTTAAAAACAATAAAAA
ATTTTCAAAATATTTTTTTTTAA

Upstream 100 bases:

>100_bases
ATTAAATATAAATTTAATATTTATACTATTTTTTGAGAAAAAAATATTTTTAAAAATAAAATTTGTTAAAAATAATAAAT
AAATATTTTAGAGAAAATAA

Downstream 100 bases:

>100_bases
TTTTTATTTTTTAAAAATTAAAATATATAATAAAATATTATTAAGGATTTATATATGAAGTTTTCTAAAGAAAAAGAAAT
TATGTTTACTGGAATTCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNNIPVFFDVPLMASSGDSLIPL
FADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPSTSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKP
IRYLINKKKSNILLSVDGGVNQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF

Sequences:

>Translated_220_residues
MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNNIPVFFDVPLMASSGDSLIPL
FADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPSTSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKP
IRYLINKKKSNILLSVDGGVNQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF
>Mature_220_residues
MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNNIPVFFDVPLMASSGDSLIPL
FADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPSTSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKP
IRYLINKKKSNILLSVDGGVNQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=33.1775700934579, Blast_Score=124, Evalue=6e-29,
Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=32.7102803738318, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI24307923, Length=107, Percent_Identity=33.6448598130841, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1789788, Length=217, Percent_Identity=49.7695852534562, Blast_Score=224, Evalue=5e-60,
Organism=Escherichia coli, GI1790523, Length=202, Percent_Identity=33.1683168316832, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1790754, Length=214, Percent_Identity=26.1682242990654, Blast_Score=91, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17552948, Length=216, Percent_Identity=36.1111111111111, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6322341, Length=217, Percent_Identity=34.5622119815668, Blast_Score=132, Evalue=4e-32,
Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=34.2723004694836, Blast_Score=134, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24604; Mature: 24604

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNN
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC
IPVFFDVPLMASSGDSLIPLFADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPS
CCEEEECCEEECCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCC
TSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKPIRYLINKKKSNILLSVDGGV
CCHHHHHHHHHHHCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
NQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF
CHHHEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNN
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC
IPVFFDVPLMASSGDSLIPLFADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPS
CCEEEECCEEECCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCC
TSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKPIRYLINKKKSNILLSVDGGV
CCHHHHHHHHHHHCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
NQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF
CHHHEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]