Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is rpe [H]
Identifier: 116515269
GI number: 116515269
Start: 376327
End: 376989
Strand: Reverse
Name: rpe [H]
Synonym: BCc_351
Alternate gene names: 116515269
Gene position: 376989-376327 (Counterclockwise)
Preceding gene: 116515270
Following gene: 116515268
Centisome position: 90.54
GC content: 22.32
Gene sequence:
>663_bases ATGAAAAAATTTTTAATTATTCCATCAATTTTATCTGCAGATTTTTGTTATTTAGGAAATGAATTACATAAGCTTTTACG TGCTGGTTGTCAATTAATTCATTTTGATTTAATGGATAATCATTATGTTCCAAATTTTACTATTGGTCCTATGATATTAA AATCTGTTAAAAATAATAATATTCCCGTTTTTTTTGATGTTCCTTTAATGGCTTCTTCCGGTGATTCTTTAATTCCTTTA TTTGCTGATTTAAATGTTAAATTTATTACTATTCATCCTGAAACAACCAATCCTTTACCTAGAACTATACCATTAATTAA AAAAATAGGATGTAACGTTGGTTTAGCTTTAAATCCCTCTACTTCCTTAAATTGTCTTGATTATATTATTAAAGAATTAG ATTTAATTTTAGTAATGGCTGTTAATCCCGGTTTTGGAGGTCAAGTTTTTTTAAAAAATACCTTTAAAAAAATTAAACCT ATACGTTATTTAATTAATAAAAAAAAAAGTAATATTTTATTATCTGTAGATGGTGGAGTAAATCAATCAAATATTTTAAA AATTATTGATTCTGGAGCAGATTATTTAGTAATTGGAAGTGCAATTTTTAATTTTAAAAATTATTTAAAAACAATAAAAA ATTTTCAAAATATTTTTTTTTAA
Upstream 100 bases:
>100_bases ATTAAATATAAATTTAATATTTATACTATTTTTTGAGAAAAAAATATTTTTAAAAATAAAATTTGTTAAAAATAATAAAT AAATATTTTAGAGAAAATAA
Downstream 100 bases:
>100_bases TTTTTATTTTTTAAAAATTAAAATATATAATAAAATATTATTAAGGATTTATATATGAAGTTTTCTAAAGAAAAAGAAAT TATGTTTACTGGAATTCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNNIPVFFDVPLMASSGDSLIPL FADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPSTSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKP IRYLINKKKSNILLSVDGGVNQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF
Sequences:
>Translated_220_residues MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNNIPVFFDVPLMASSGDSLIPL FADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPSTSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKP IRYLINKKKSNILLSVDGGVNQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF >Mature_220_residues MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNNIPVFFDVPLMASSGDSLIPL FADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPSTSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKP IRYLINKKKSNILLSVDGGVNQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF
Specific function: Unknown
COG id: COG0036
COG function: function code G; Pentose-5-phosphate-3-epimerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]
Homologues:
Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=33.1775700934579, Blast_Score=124, Evalue=6e-29, Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=32.7102803738318, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI24307923, Length=107, Percent_Identity=33.6448598130841, Blast_Score=70, Evalue=1e-12, Organism=Escherichia coli, GI1789788, Length=217, Percent_Identity=49.7695852534562, Blast_Score=224, Evalue=5e-60, Organism=Escherichia coli, GI1790523, Length=202, Percent_Identity=33.1683168316832, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1790754, Length=214, Percent_Identity=26.1682242990654, Blast_Score=91, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17552948, Length=216, Percent_Identity=36.1111111111111, Blast_Score=131, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6322341, Length=217, Percent_Identity=34.5622119815668, Blast_Score=132, Evalue=4e-32, Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=34.2723004694836, Blast_Score=134, Evalue=6e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000056 - InterPro: IPR011060 [H]
Pfam domain/function: PF00834 Ribul_P_3_epim [H]
EC number: =5.1.3.1 [H]
Molecular weight: Translated: 24604; Mature: 24604
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: PS01085 RIBUL_P_3_EPIMER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNN CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC IPVFFDVPLMASSGDSLIPLFADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPS CCEEEECCEEECCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCC TSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKPIRYLINKKKSNILLSVDGGV CCHHHHHHHHHHHCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC NQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF CHHHEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKFLIIPSILSADFCYLGNELHKLLRAGCQLIHFDLMDNHYVPNFTIGPMILKSVKNNN CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCC IPVFFDVPLMASSGDSLIPLFADLNVKFITIHPETTNPLPRTIPLIKKIGCNVGLALNPS CCEEEECCEEECCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCC TSLNCLDYIIKELDLILVMAVNPGFGGQVFLKNTFKKIKPIRYLINKKKSNILLSVDGGV CCHHHHHHHHHHHCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC NQSNILKIIDSGADYLVIGSAIFNFKNYLKTIKNFQNIFF CHHHEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12089438 [H]