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The map label for this gene is cspE [H]

Identifier: 116515229

GI number: 116515229

Start: 349218

End: 349427

Strand: Reverse

Name: cspE [H]

Synonym: BCc_308

Alternate gene names: 116515229

Gene position: 349427-349218 (Counterclockwise)

Preceding gene: 116515230

Following gene: 116515227

Centisome position: 83.92

GC content: 36.67

Gene sequence:

>210_bases
ATGTCCAAGATAAAAGGTAATGTAAAATGGTTTAATGAATCTAAAGGTTTTGGTTTCATTACTCCTGAAGATGGAAGCAA
AGATGTTTTTGTTCATTTTTCTGCTATCCAAAGCAACGGATTTAAGACTTTGGCAGAAGGTCAAAGTGTTGAGTTCGAAA
TTACCGAAGGCGCAAAAGGGCCGTCAGCTGCTAATGTTGTTAGTGTTTAA

Upstream 100 bases:

>100_bases
AGTAATAAGATTTTTTAGTAAAATATTTTATTACTATGTATAATATATTATGTTTAGGTATAATTTTTAGTTTATATTTT
CACTCTAAGGTAATGTATAG

Downstream 100 bases:

>100_bases
TTTAAACCGAAAAAAGTTTTATTATACTAATTGATTTAGTAGTACTTTTGCGGTGCGGAATATTATGATACCGCATCGCA
AATTTAATTTATAAAACCAT

Product: cold shock protein CspE

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGPSAANVVSV

Sequences:

>Translated_69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGPSAANVVSV
>Mature_68_residues
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGPSAANVVSV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=70, Percent_Identity=45.7142857142857, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI34098946, Length=70, Percent_Identity=45.7142857142857, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI224586884, Length=70, Percent_Identity=45.7142857142857, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI156415990, Length=68, Percent_Identity=44.1176470588235, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=91.304347826087, Blast_Score=130, Evalue=1e-32,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=81.1594202898551, Blast_Score=118, Evalue=6e-29,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=69.1176470588235, Blast_Score=102, Evalue=4e-24,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=70.1492537313433, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=70.5882352941177, Blast_Score=99, Evalue=6e-23,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=68.1818181818182, Blast_Score=97, Evalue=2e-22,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=55.3846153846154, Blast_Score=84, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17533635, Length=70, Percent_Identity=44.2857142857143, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508335, Length=69, Percent_Identity=42.0289855072464, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17507385, Length=69, Percent_Identity=40.5797101449275, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=50.7936507936508, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7383; Mature: 7252

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG
CCCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCC
PSAANVVSV
CCCCEEEEC
>Mature Secondary Structure 
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG
CCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCC
PSAANVVSV
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]