Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is prfB
Identifier: 116515195
GI number: 116515195
Start: 301781
End: 301855
Strand: Direct
Name: prfB
Synonym: BCc_269
Alternate gene names: NA
Gene position: 301781-301855 (Clockwise)
Preceding gene: 116515193
Following gene: 116515196
Centisome position: 72.48
GC content: 13.33
Gene sequence:
>1099_bases ATGTTAGAAATTTCTATATTAAAGAAAAAAATAAAAAAATTAAAAGATAAAATAACAATATTAAAGAGGAATCTTTGACT ATTTTTATATAAAAAAAAAAATAAAATTAATAAATTTTAAAATAAAAAAACTTTTTAAAAAAAAAAAATTTAAAAAAATA TCATCTTTATATAAAAAAAAAAACAATTTTTTAAAAAAAATTAATATATTTAAAAAATTCAAAAAAAAAATCAAAGATAT AAAAAATTGGATAAAAATATTTAAATTAGAAAATGATATTAATATTCTTAAAGAAATAAATATACAATATAAAGCAATAA AAAATAAAATATATGTTTTGGAATCATATATGATGTTTAATCATAAAAATGATAAAAATAATTGTTATTTAGATATACAA TCTGGTTCAGGAGGTTTAGAATCACAAGATTGGACAAAAATGTTATTAAAAATGTATTTAAAATATTTATATAAAAAAAA ATTTGTAACTAAAATAATTTCTGAAACAGTTGGAGATAATGGAGGAATAAAATCCATTACTCTAAGTATTAAAGGAAAAT TTGCATTTGGTTGGTTAAGAACAGAAACAGGAATACATAGGCTAGTTAGAAAAAGTCCTTTTGATGCAGGAAAAAAAAGA CATACTACATTTAGTTCAATATTTGTATATCCAGCATTAACAAATAATATTGATATAAATCTTCAATCTAAAAATTTAAG AATTGATGTATATAGATCTTCTGGAGCTGGAGGACAACATGTAAATCGAACAGAATCAGCAGTTCGTATAACACATCTTC CAACTGGAATAGTAACACAATGTCAAAATAGCAGATCACAACACAAAAATAAAAATACAGCAATAAAACAATTAAAAGCA AAATTATACGAAATAGAAATAAAAAAAAAAAAAATAGAAAAAAAAAAAATAAATAAAAAAAAATCAAATATTCGATCAGG AAATCAAATTCGTTCATATATATTAGATGATTCAAGAATAAAAGATATGAGAACTAAATTAGAAAGGAAAGATATTAATA ATGTTTTAAATGGTGATATTCATGAATTCATTAAAAAAAGTTTAAAAATGGGATTTTAA
Upstream 100 bases:
>100_bases ATAAATATATTTATATTATATAATAATATTTTATAAAATATATTTATATAAAATTTTATCTTATATAAAATAAATATATA TAATTAAAAATGAGAACAAA
Downstream 100 bases:
>100_bases ATATGTCAAAAACTTTAAAAATAATTCAAAAAAAAAAATCCTTAGAAAAAGAATTATATACAAGAAAAAAAAAACTAAAA AAATTAAAAAAATTAGGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 25; Mature: 25
Protein sequence:
>365_residues MLEISILKKKIKKLKDKITILKRNLDYFYIKKKIKLINFKIKKLFKKKKFKKISSLYKKKNNFLKKINIFKKFKKKIKDI KNWIKIFKLENDINILKEINIQYKAIKNKIYVLESYMMFNHKNDKNNCYLDIQSGSGGLESQDWTKMLLKMYLKYLYKKK FVTKIISETVGDNGGIKSITLSIKGKFAFGWLRTETGIHRLVRKSPFDAGKKRHTTFSSIFVYPALTNNIDINLQSKNLR IDVYRSSGAGGQHVNRTESAVRITHLPTGIVTQCQNSRSQHKNKNTAIKQLKAKLYEIEIKKKKIEKKKINKKKSNIRSG NQIRSYILDDSRIKDMRTKLERKDINNVLNGDIHEFIKKSLKMGF
Sequences:
>Translated_25_residues MLEISILKKKIKKLKDKITILKRNL >Mature_25_residues MLEISILKKKIKKLKDKITILKRNL
Specific function: Unknown
COG id: COG1186
COG function: function code J; Protein chain release factor B
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 3009; Mature: 3009
Theoretical pI: Translated: 11.26; Mature: 11.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEISILKKKIKKLKDKITILKRNL CCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLEISILKKKIKKLKDKITILKRNL CCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA