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The map label for this gene is rpiA [H]

Identifier: 116515188

GI number: 116515188

Start: 290883

End: 291539

Strand: Reverse

Name: rpiA [H]

Synonym: BCc_259

Alternate gene names: 116515188

Gene position: 291539-290883 (Counterclockwise)

Preceding gene: 116515192

Following gene: 116515187

Centisome position: 70.02

GC content: 23.29

Gene sequence:

>657_bases
ATGTTTGATACGTTAAAAAAATCTGTAGCAAAATATGCACTGTCATATATAAAAAAAAATTCTATTATTGGAATTGGGTC
AGGATCTACTATAGAATTTTTTATTAAAGAGTTATATACAATTTTTTCAAATATACAAGGTGTTGTAGTCAGTTCAAAAA
AATCAGAAAAATTATTAAAAAAAATTAATATTCCAATTTATGATTTAAATTCTATACAAAATTTAGATATTTATATAGAT
AGTGCTGATCAAGTAAATTCTTCATTAGAAATGATTAAGGGTGGAGGAGGGGCTTTAACTCGAGAAAAAATTATAGCTTC
TGCAGCAAAAAGATTTTTATGTATTATTGATAAATCAAAGTATGTTAATACATTTAATAATTTTCCAATACCCATAGAAG
TTATTCCTATGTCACTTATGTTTGTTTCTAGAGAAATTCTAAAAATGGGTGGATTCGTAAAATACAGAAAAAATTTTATT
ACTGATAATGGTAATTATATTATTGATGCATATAATTTAAATGTTATATACCCTACTAATTTAGAAAAAATTATTAATAA
TATTCCCGGAGTAGTTTCTGTAGGTTTATTTTGTATTCGAAAGGCTGATACTTTATTAATAAGTTATTCCAATTATGTTC
GAACAATAATTTTATAA

Upstream 100 bases:

>100_bases
TTTTGATACCGGCATCCCTGGTTCGAATCCAGGTACCCCAGATAAATTTTTTTTTATTTTTAAAAATTTTTCTTTTTAAT
GTATTTTATATGGGTGATAT

Downstream 100 bases:

>100_bases
TTAAATATTTTTTATAATTAAATTTTTATAGAGAAAAATTTTATGTCATTAAAATCTTTAGATATAGAAGTTTTTGGTAG
ACTTATAAAAGTCAATTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Phosphoriboisomerase A; PRI [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLKKINIPIYDLNSIQNLDIYID
SADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSKYVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFI
TDNGNYIIDAYNLNVIYPTNLEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL

Sequences:

>Translated_218_residues
MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLKKINIPIYDLNSIQNLDIYID
SADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSKYVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFI
TDNGNYIIDAYNLNVIYPTNLEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL
>Mature_218_residues
MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLKKINIPIYDLNSIQNLDIYID
SADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSKYVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFI
TDNGNYIIDAYNLNVIYPTNLEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL

Specific function: Nonoxidative branch of the pentose phosphate pathway. [C]

COG id: COG0120

COG function: function code G; Ribose 5-phosphate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribose 5-phosphate isomerase family [H]

Homologues:

Organism=Homo sapiens, GI94536842, Length=209, Percent_Identity=36.8421052631579, Blast_Score=116, Evalue=2e-26,
Organism=Escherichia coli, GI1789280, Length=215, Percent_Identity=48.3720930232558, Blast_Score=230, Evalue=4e-62,
Organism=Caenorhabditis elegans, GI17551758, Length=224, Percent_Identity=32.5892857142857, Blast_Score=113, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6324669, Length=200, Percent_Identity=30.5, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281364072, Length=198, Percent_Identity=32.8282828282828, Blast_Score=93, Evalue=1e-19,

Paralogues:

None

Copy number: 740 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004788
- InterPro:   IPR020672 [H]

Pfam domain/function: PF06026 Rib_5-P_isom_A [H]

EC number: =5.3.1.6 [H]

Molecular weight: Translated: 24481; Mature: 24481

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLK
CCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
KINIPIYDLNSIQNLDIYIDSADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSK
HHCCCEEECCCCCEEEEEEECHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECCH
YVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFITDNGNYIIDAYNLNVIYPTN
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCCCCEEEEEEEEEEEECCC
LEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL
HHHHHHCCCCHHHHHHHHHHCCCEEEEEECHHEEEEEC
>Mature Secondary Structure
MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLK
CCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH
KINIPIYDLNSIQNLDIYIDSADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSK
HHCCCEEECCCCCEEEEEEECHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECCH
YVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFITDNGNYIIDAYNLNVIYPTN
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCCCCEEEEEEEEEEEECCC
LEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL
HHHHHHCCCCHHHHHHHHHHCCCEEEEEECHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA