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The map label for this gene is rbfA

Identifier: 116515163

GI number: 116515163

Start: 266206

End: 266556

Strand: Reverse

Name: rbfA

Synonym: BCc_230

Alternate gene names: 116515163

Gene position: 266556-266206 (Counterclockwise)

Preceding gene: 116515164

Following gene: 116515162

Centisome position: 64.02

GC content: 18.8

Gene sequence:

>351_bases
ATGTTAAAAGATTTTAGTCGATCTATGAGATTAGAACGTAGTTTATATAAGGAAATTGCTGTAATTATTCAAAAAAATTT
AAGAGATCCAAGATTAAATTCTTTTATTACTATTACAGAAGTAAAATTATCTTATGATTTAAGTTATGCAAAAGTATTTA
TTACATTTCTTAATTATGATGATAAAAAAAATATTAAAATAATATTAGGTATTTTACAAAATGCAACTGGATATATTCGT
TCATTACTTAATAAAAAAATATATTTGCGTATTGTTCCTAAATTATTTTTTGTTTATGATACTTCCCTTATTAATGGTAT
TTTTATTTCTGAATTAATTAAAAATATTTAA

Upstream 100 bases:

>100_bases
AATTATTCCAAATAATAAAATAATATATTTATATTTTAATATAAAAATTAAATCTTCATTTTTTTAAAATAAAAATATAT
TGATATTACTAGGAAATTTT

Downstream 100 bases:

>100_bases
TTAATTTAGTAATAAATAATATCCTAATTATATATTATAGGTTAATGAATGGTTTTTCAAAATAATAAAAATTATAATGG
AATATTATTATTAGATAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MLKDFSRSMRLERSLYKEIAVIIQKNLRDPRLNSFITITEVKLSYDLSYAKVFITFLNYDDKKNIKIILGILQNATGYIR
SLLNKKIYLRIVPKLFFVYDTSLINGIFISELIKNI

Sequences:

>Translated_116_residues
MLKDFSRSMRLERSLYKEIAVIIQKNLRDPRLNSFITITEVKLSYDLSYAKVFITFLNYDDKKNIKIILGILQNATGYIR
SLLNKKIYLRIVPKLFFVYDTSLINGIFISELIKNI
>Mature_116_residues
MLKDFSRSMRLERSLYKEIAVIIQKNLRDPRLNSFITITEVKLSYDLSYAKVFITFLNYDDKKNIKIILGILQNATGYIR
SLLNKKIYLRIVPKLFFVYDTSLINGIFISELIKNI

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=46.551724137931, Blast_Score=120, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BUCCC (Q057K0)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802792.1
- ProteinModelPortal:   Q057K0
- SMR:   Q057K0
- STRING:   Q057K0
- EnsemblBacteria:   EBBUCT00000001327
- GeneID:   4440805
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_230
- eggNOG:   COG0858
- GeneTree:   EBGT00050000007895
- HOGENOM:   HBG751055
- OMA:   FVYDTSL
- BioCyc:   BAPH372461:BCC_230-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13672; Mature: 13672

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDFSRSMRLERSLYKEIAVIIQKNLRDPRLNSFITITEVKLSYDLSYAKVFITFLNYD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHCCC
DKKNIKIILGILQNATGYIRSLLNKKIYLRIVPKLFFVYDTSLINGIFISELIKNI
CCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKDFSRSMRLERSLYKEIAVIIQKNLRDPRLNSFITITEVKLSYDLSYAKVFITFLNYD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHCCC
DKKNIKIILGILQNATGYIRSLLNKKIYLRIVPKLFFVYDTSLINGIFISELIKNI
CCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA