Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is yceA [C]
Identifier: 116515155
GI number: 116515155
Start: 254777
End: 255739
Strand: Reverse
Name: yceA [C]
Synonym: BCc_222
Alternate gene names: 116515155
Gene position: 255739-254777 (Counterclockwise)
Preceding gene: 116515156
Following gene: 116515154
Centisome position: 61.42
GC content: 16.61
Gene sequence:
>963_bases ATGATATATAAAAAAAATTGTTTAGTTTTAAATTCTAATTTAAAAAATATTTATCAAAATTATAAAAACAAAAAATATAT TATAGCTTCTTTTTATAAATATTTTTTTATTTCTAATCCTGAAAAATTATTATTTTTTATTAAAAAAATTTTAGTAAAAG AAAATATTTTAGGGAGAATATACATTTCTACAGAAGGTATAAATGCATCGATTAGTATTCCTTATTTAAAATTTAAATAT ATAAAAAACTTTTTTAAAAATATTAATCAAAAAACTAAAAAAATGTATATAAATTATTCTATTGAAAAAAAACAGATTGC TTTTTTTGATTTAAGAATAAAAATAAAAAAACAAATTGTATCTAGTAAAATAAAAAATTTTTTTTTTAATAATAAAAATC ATGGAATTTATTTAACAGCTCATAAAGTAAATAAATATATTTTTAATAAAGATTGTGTTTTTGTTGATATGCGTAATAGT TATGAATATGAAATTGGTCATTTTTATAATTCTTTAACTATTCCTGCAAATACTTTTCGTGAACAATTAAAAAAATTACC AGAATCTTTAAAATTATACAAAAAAAAAAAAATTATTATGTATTGTACTGGAGGAATACGATGTGAAAAATCTACAGTAC TTCTAAAAAATTATGGATTTTCAAAAATATATCAAATACATGGGGGTATTTTAAAATATATAAAACAAACAAAAAAATAT AATTTACCTAATTATTTTCAAGGAAAAATTTTTGTTTTTGATGCTCGTTTATCAATTAAAATCACAAATGATATTTTTTC TAAATGTATTAATTGTAATAAATATACAAATCGTTTACATATTAATTGCTATAATAGTTCTTGTAATCATTTATTTATTC AATGTGTTTTTTGTTCAATACAATTAAGTTCTTGTTGTTCAATACATTGTAAAGATACAATATATCGACAATTTATTAAA TAA
Upstream 100 bases:
>100_bases TTTAAAAAAAATTAATTATCAAAAAAAAATATTATTAAAAAAAATTTAATTTTAAAAATATTTTTAAAAATAGTTTTTTT TGAATAAAATTGGATTATAC
Downstream 100 bases:
>100_bases ATATATTTTTAAATAAATTTAGTATTTTATTTTTCTATTAGAAATAATGATTATTAACATTATTAAAAAATTTATATATA AATAATTATATATATATTAT
Product: YceA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRIYISTEGINASISIPYLKFKY IKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIVSSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNS YEYEIGHFYNSLTIPANTFREQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSIQLSSCCSIHCKDTIYRQFIK
Sequences:
>Translated_320_residues MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRIYISTEGINASISIPYLKFKY IKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIVSSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNS YEYEIGHFYNSLTIPANTFREQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSIQLSSCCSIHCKDTIYRQFIK >Mature_320_residues MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRIYISTEGINASISIPYLKFKY IKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIVSSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNS YEYEIGHFYNSLTIPANTFREQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSIQLSSCCSIHCKDTIYRQFIK
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain [H]
Homologues:
Organism=Homo sapiens, GI111038120, Length=325, Percent_Identity=25.5384615384615, Blast_Score=125, Evalue=4e-29, Organism=Escherichia coli, GI1787294, Length=281, Percent_Identity=40.9252669039146, Blast_Score=256, Evalue=2e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR020936 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: NA
Molecular weight: Translated: 38194; Mature: 38194
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 4.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRI CEEECCEEEEECCHHHHHHHHCCCEEEEEEEEEHHEECCHHHHHHHHHHHHHHCCCEEEE YISTEGINASISIPYLKFKYIKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIV EEEECCCCEEEECCHHHHHHHHHHHHHCCCHHHEEEEEEEECCCEEEEEEEEEHHHHHHH SSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNSYEYEIGHFYNSLTIPANTFR HHHHHHHHCCCCCCEEEEEEEECCCEEECCCEEEEEECCCCCEEEHHEECEEECCHHHHH EQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY HHHHHHHHHHHHHHHCEEEEEECCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSI CCCCEECCEEEEEEEEEEEEECHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEHHHHHE QLSSCCSIHCKDTIYRQFIK ECCCCCEEEEHHHHHHHHCC >Mature Secondary Structure MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRI CEEECCEEEEECCHHHHHHHHCCCEEEEEEEEEHHEECCHHHHHHHHHHHHHHCCCEEEE YISTEGINASISIPYLKFKYIKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIV EEEECCCCEEEECCHHHHHHHHHHHHHCCCHHHEEEEEEEECCCEEEEEEEEEHHHHHHH SSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNSYEYEIGHFYNSLTIPANTFR HHHHHHHHCCCCCCEEEEEEEECCCEEECCCEEEEEECCCCCEEEHHEECEEECCHHHHH EQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY HHHHHHHHHHHHHHHCEEEEEECCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSI CCCCEECCEEEEEEEEEEEEECHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEHHHHHE QLSSCCSIHCKDTIYRQFIK ECCCCCEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA