Definition Buchnera aphidicola str. Cc (Cinara cedri), complete genome.
Accession NC_008513
Length 416,380

Click here to switch to the map view.

The map label for this gene is yceA [C]

Identifier: 116515155

GI number: 116515155

Start: 254777

End: 255739

Strand: Reverse

Name: yceA [C]

Synonym: BCc_222

Alternate gene names: 116515155

Gene position: 255739-254777 (Counterclockwise)

Preceding gene: 116515156

Following gene: 116515154

Centisome position: 61.42

GC content: 16.61

Gene sequence:

>963_bases
ATGATATATAAAAAAAATTGTTTAGTTTTAAATTCTAATTTAAAAAATATTTATCAAAATTATAAAAACAAAAAATATAT
TATAGCTTCTTTTTATAAATATTTTTTTATTTCTAATCCTGAAAAATTATTATTTTTTATTAAAAAAATTTTAGTAAAAG
AAAATATTTTAGGGAGAATATACATTTCTACAGAAGGTATAAATGCATCGATTAGTATTCCTTATTTAAAATTTAAATAT
ATAAAAAACTTTTTTAAAAATATTAATCAAAAAACTAAAAAAATGTATATAAATTATTCTATTGAAAAAAAACAGATTGC
TTTTTTTGATTTAAGAATAAAAATAAAAAAACAAATTGTATCTAGTAAAATAAAAAATTTTTTTTTTAATAATAAAAATC
ATGGAATTTATTTAACAGCTCATAAAGTAAATAAATATATTTTTAATAAAGATTGTGTTTTTGTTGATATGCGTAATAGT
TATGAATATGAAATTGGTCATTTTTATAATTCTTTAACTATTCCTGCAAATACTTTTCGTGAACAATTAAAAAAATTACC
AGAATCTTTAAAATTATACAAAAAAAAAAAAATTATTATGTATTGTACTGGAGGAATACGATGTGAAAAATCTACAGTAC
TTCTAAAAAATTATGGATTTTCAAAAATATATCAAATACATGGGGGTATTTTAAAATATATAAAACAAACAAAAAAATAT
AATTTACCTAATTATTTTCAAGGAAAAATTTTTGTTTTTGATGCTCGTTTATCAATTAAAATCACAAATGATATTTTTTC
TAAATGTATTAATTGTAATAAATATACAAATCGTTTACATATTAATTGCTATAATAGTTCTTGTAATCATTTATTTATTC
AATGTGTTTTTTGTTCAATACAATTAAGTTCTTGTTGTTCAATACATTGTAAAGATACAATATATCGACAATTTATTAAA
TAA

Upstream 100 bases:

>100_bases
TTTAAAAAAAATTAATTATCAAAAAAAAATATTATTAAAAAAAATTTAATTTTAAAAATATTTTTAAAAATAGTTTTTTT
TGAATAAAATTGGATTATAC

Downstream 100 bases:

>100_bases
ATATATTTTTAAATAAATTTAGTATTTTATTTTTCTATTAGAAATAATGATTATTAACATTATTAAAAAATTTATATATA
AATAATTATATATATATTAT

Product: YceA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRIYISTEGINASISIPYLKFKY
IKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIVSSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNS
YEYEIGHFYNSLTIPANTFREQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY
NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSIQLSSCCSIHCKDTIYRQFIK

Sequences:

>Translated_320_residues
MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRIYISTEGINASISIPYLKFKY
IKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIVSSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNS
YEYEIGHFYNSLTIPANTFREQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY
NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSIQLSSCCSIHCKDTIYRQFIK
>Mature_320_residues
MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRIYISTEGINASISIPYLKFKY
IKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIVSSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNS
YEYEIGHFYNSLTIPANTFREQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY
NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSIQLSSCCSIHCKDTIYRQFIK

Specific function: Unknown. [C]

COG id: COG1054

COG function: function code R; Predicted sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Homo sapiens, GI111038120, Length=325, Percent_Identity=25.5384615384615, Blast_Score=125, Evalue=4e-29,
Organism=Escherichia coli, GI1787294, Length=281, Percent_Identity=40.9252669039146, Blast_Score=256, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR020936 [H]

Pfam domain/function: PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 38194; Mature: 38194

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRI
CEEECCEEEEECCHHHHHHHHCCCEEEEEEEEEHHEECCHHHHHHHHHHHHHHCCCEEEE
YISTEGINASISIPYLKFKYIKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIV
EEEECCCCEEEECCHHHHHHHHHHHHHCCCHHHEEEEEEEECCCEEEEEEEEEHHHHHHH
SSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNSYEYEIGHFYNSLTIPANTFR
HHHHHHHHCCCCCCEEEEEEEECCCEEECCCEEEEEECCCCCEEEHHEECEEECCHHHHH
EQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY
HHHHHHHHHHHHHHHCEEEEEECCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC
NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSI
CCCCEECCEEEEEEEEEEEEECHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEHHHHHE
QLSSCCSIHCKDTIYRQFIK
ECCCCCEEEEHHHHHHHHCC
>Mature Secondary Structure
MIYKKNCLVLNSNLKNIYQNYKNKKYIIASFYKYFFISNPEKLLFFIKKILVKENILGRI
CEEECCEEEEECCHHHHHHHHCCCEEEEEEEEEHHEECCHHHHHHHHHHHHHHCCCEEEE
YISTEGINASISIPYLKFKYIKNFFKNINQKTKKMYINYSIEKKQIAFFDLRIKIKKQIV
EEEECCCCEEEECCHHHHHHHHHHHHHCCCHHHEEEEEEEECCCEEEEEEEEEHHHHHHH
SSKIKNFFFNNKNHGIYLTAHKVNKYIFNKDCVFVDMRNSYEYEIGHFYNSLTIPANTFR
HHHHHHHHCCCCCCEEEEEEEECCCEEECCCEEEEEECCCCCEEEHHEECEEECCHHHHH
EQLKKLPESLKLYKKKKIIMYCTGGIRCEKSTVLLKNYGFSKIYQIHGGILKYIKQTKKY
HHHHHHHHHHHHHHHCEEEEEECCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC
NLPNYFQGKIFVFDARLSIKITNDIFSKCINCNKYTNRLHINCYNSSCNHLFIQCVFCSI
CCCCEECCEEEEEEEEEEEEECHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEHHHHHE
QLSSCCSIHCKDTIYRQFIK
ECCCCCEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA