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The map label for this gene is ompA [H]

Identifier: 116515143

GI number: 116515143

Start: 242914

End: 243996

Strand: Reverse

Name: ompA [H]

Synonym: BCc_210

Alternate gene names: 116515143

Gene position: 243996-242914 (Counterclockwise)

Preceding gene: 116515154

Following gene: 116515141

Centisome position: 58.6

GC content: 14.4

Gene sequence:

>1083_bases
ATGAAAAAATTTTTTATAGTCAGTACTTTGCTATTATCTAGTATTTTTTCTGTTGCTCATGCTGAATCAAATACTGTAAA
AAAAAAATGGAATTTTGGCATTCAATTTAATTCATTAAATCCTTTAAAATCATTTTATAATTATAAAATTTTATGTTTAA
AAAATTATAAAAATATTACAAAAAAAATTATTTCTTTAAATCCTGGTTTTTTTACAAAATATCAGAAAAATCCTTATCTT
AATTTTGAATTAAAATTAAATCTTTTAGAAAATAAAATTAAAGATATAAAAAAAAATACATTAAACGCATATTTTTCTAA
TGTTGAATATGCTACGAATATTATGTATCCTTTAAAAAAATATTTAAATATTTATACAAAAATTGGAGCAAAAATAAAAG
CTAATATTCATAATACATGTTTAAAAGATATATTTATGATAAAGAAATATAAAAAATTTTCTCCATTATTTTCTATTGGA
TTAGAACTGTTAATTAATAAATATTTACATAGTAATATAGATATTAATTTAAACAAACATTTTCATAAATTACAATTAAA
TAAGATATCTACTTTTACTGATAATGTTAATATAGGTTTTTCATGGAAATTTAATCCTGTTAAAGATAAAATTATAAATC
TTTTTAAAAAAAGTAATAATAAACTTTTTTTAGAAAATTATGAAAGTTTTAATAAATATAAAAATATTAAAGATAAAATA
TTTTTTCATCCTAAAATTTTTAAATTATCTTCTACATCAAATGATTTTTTAAATGTTTTAATAAATAAAATTAGTAAAAT
AAAAAAAGATAAAATTTATCTTATAATTACAGGAAATATGAATAATCAATTAAAAAAAACAAAAAAAAATAAAATTATGT
CTTTTAAAAGAGCTTTAGAAATTTCTAAATTTTTTGTAAATAATGGAATTTTAAAAAAAAATATTATTATACAAGGAATA
AATAATATAGATTTAAAAAATAATATTATATTAAATAAATTTTTTACAGGGAAAAATTTATTAAATGATCCATATTTTGA
AAATCAAAAAGTAAATATTGAATTAAAAATAAATTCTAAATAA

Upstream 100 bases:

>100_bases
TTTTTAATATATTATTTTTATAAAATAATTGTATTTAATATATAATAATATATTAATATTATTAATATTATTTAATAATT
TTAAAAATCAAGGAAAATAT

Downstream 100 bases:

>100_bases
TTTTTTTAATAAAATTAAAAATTTATTTAATTATTTTTATGAAATGTATTTCATAGAATATTTTTTGTATTTCTTTACTT
TTAAATAATTAATTTGTATA

Product: OmpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MKKFFIVSTLLLSSIFSVAHAESNTVKKKWNFGIQFNSLNPLKSFYNYKILCLKNYKNITKKIISLNPGFFTKYQKNPYL
NFELKLNLLENKIKDIKKNTLNAYFSNVEYATNIMYPLKKYLNIYTKIGAKIKANIHNTCLKDIFMIKKYKKFSPLFSIG
LELLINKYLHSNIDINLNKHFHKLQLNKISTFTDNVNIGFSWKFNPVKDKIINLFKKSNNKLFLENYESFNKYKNIKDKI
FFHPKIFKLSSTSNDFLNVLINKISKIKKDKIYLIITGNMNNQLKKTKKNKIMSFKRALEISKFFVNNGILKKNIIIQGI
NNIDLKNNIILNKFFTGKNLLNDPYFENQKVNIELKINSK

Sequences:

>Translated_360_residues
MKKFFIVSTLLLSSIFSVAHAESNTVKKKWNFGIQFNSLNPLKSFYNYKILCLKNYKNITKKIISLNPGFFTKYQKNPYL
NFELKLNLLENKIKDIKKNTLNAYFSNVEYATNIMYPLKKYLNIYTKIGAKIKANIHNTCLKDIFMIKKYKKFSPLFSIG
LELLINKYLHSNIDINLNKHFHKLQLNKISTFTDNVNIGFSWKFNPVKDKIINLFKKSNNKLFLENYESFNKYKNIKDKI
FFHPKIFKLSSTSNDFLNVLINKISKIKKDKIYLIITGNMNNQLKKTKKNKIMSFKRALEISKFFVNNGILKKNIIIQGI
NNIDLKNNIILNKFFTGKNLLNDPYFENQKVNIELKINSK
>Mature_360_residues
MKKFFIVSTLLLSSIFSVAHAESNTVKKKWNFGIQFNSLNPLKSFYNYKILCLKNYKNITKKIISLNPGFFTKYQKNPYL
NFELKLNLLENKIKDIKKNTLNAYFSNVEYATNIMYPLKKYLNIYTKIGAKIKANIHNTCLKDIFMIKKYKKFSPLFSIG
LELLINKYLHSNIDINLNKHFHKLQLNKISTFTDNVNIGFSWKFNPVKDKIINLFKKSNNKLFLENYESFNKYKNIKDKI
FFHPKIFKLSSTSNDFLNVLINKISKIKKDKIYLIITGNMNNQLKKTKKNKIMSFKRALEISKFFVNNGILKKNIIIQGI
NNIDLKNNIILNKFFTGKNLLNDPYFENQKVNIELKINSK

Specific function: Acts as a porin with low permeability that allows slow penetration of small solutes [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR002368
- InterPro:   IPR006690
- InterPro:   IPR000498
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA; PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 42437; Mature: 42437

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFFIVSTLLLSSIFSVAHAESNTVKKKWNFGIQFNSLNPLKSFYNYKILCLKNYKNIT
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHCEEEEEEECHHHHH
KKIISLNPGFFTKYQKNPYLNFELKLNLLENKIKDIKKNTLNAYFSNVEYATNIMYPLKK
HHHHCCCCCCEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YLNIYTKIGAKIKANIHNTCLKDIFMIKKYKKFSPLFSIGLELLINKYLHSNIDINLNKH
HHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCC
FHKLQLNKISTFTDNVNIGFSWKFNPVKDKIINLFKKSNNKLFLENYESFNKYKNIKDKI
EEEEEECEEEEEECCCEEEEEEECCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHE
FFHPKIFKLSSTSNDFLNVLINKISKIKKDKIYLIITGNMNNQLKKTKKNKIMSFKRALE
EECCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
ISKFFVNNGILKKNIIIQGINNIDLKNNIILNKFFTGKNLLNDPYFENQKVNIELKINSK
HHHHHHCCCEEEECEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKKFFIVSTLLLSSIFSVAHAESNTVKKKWNFGIQFNSLNPLKSFYNYKILCLKNYKNIT
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHCEEEEEEECHHHHH
KKIISLNPGFFTKYQKNPYLNFELKLNLLENKIKDIKKNTLNAYFSNVEYATNIMYPLKK
HHHHCCCCCCEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YLNIYTKIGAKIKANIHNTCLKDIFMIKKYKKFSPLFSIGLELLINKYLHSNIDINLNKH
HHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCC
FHKLQLNKISTFTDNVNIGFSWKFNPVKDKIINLFKKSNNKLFLENYESFNKYKNIKDKI
EEEEEECEEEEEECCCEEEEEEECCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHE
FFHPKIFKLSSTSNDFLNVLINKISKIKKDKIYLIITGNMNNQLKKTKKNKIMSFKRALE
EECCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
ISKFFVNNGILKKNIIIQGINNIDLKNNIILNKFFTGKNLLNDPYFENQKVNIELKINSK
HHHHHHCCCEEEECEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]