Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is yaeT [H]
Identifier: 116515086
GI number: 116515086
Start: 170544
End: 172259
Strand: Direct
Name: yaeT [H]
Synonym: BCc_146
Alternate gene names: 116515086
Gene position: 170544-172259 (Clockwise)
Preceding gene: 116515085
Following gene: 116515087
Centisome position: 40.96
GC content: 14.39
Gene sequence:
>1716_bases ATGTTATTAAAAAAAATTTTCTTTATATTTTTTTTGTTATTTTCTACTTCTGTTTCAGCAGGAAATATTAGTAATGGGAA GAATATTTATATAAAAAAAAATAAAAATTTTTATTGTTTAAATATATTAAAATCAATTAAATTAAATTTTTTAAATTATT CTAAAAATTTTCACTTATATAAAAATAAAAAAAAAATATTAAAATTAAATAATTATATAAATTTTTCTAAAAATAATTTT TTTAGTTTGAATAAATTTAATTTTTTAAAATTTTTCAATAATAAAAAAATAGTTAATGAAATTTTTTTTTTAAATTATTT TAAAAATTTTTATATTAAAAATAATATTAATAATACTATTTTTTTAAAAAAGATTATTTCTTTACATAAATTATTTTTTT TTCATAAAAATCATAATAAGAAATATTTATCTAATTCTTTTTTTTTAAAAAATAAATTTAATAATATTTGTAATATTAAT TTTTTAAATTATAAAAATAATTATATACAAAAAAAATTGAATATTTTTAAAAATTTTAATTTTAAAAATATATTTAATAG AAGAAATATTAAAAATTTTCATATATCAACTAGTTATGATAAAGATAAGGGATTGTTTTTGCAATTGTTATTGCTAGAAA AAAATATTTTTAATACAAATAATGAATTATATTTCAGAATTTTAAAAAATTTTATTGATACAAAAATTAATATTTATTTA ATAAAATCATTAACATCATTTAAAGATTTTTTTTTAAAATCAGATGCTTTTATAAATCATTTTAAAGAAAATAATTATTC TAAAAAAAATTATATAAATAAATTATTTGGTTTTTGTTCATTATTATCTTCTCCGATTAAAAATAATAAGAAATTTTCTA TGTCTCTTGGTTATCAAAATATAAAACTTTCATATATTTCTCCACATATTAATTTATTTCAGTATTTATCATCAATTTCA AAAAAATTTTCTTTGAAAACAAAAAGAAATACTTTTTTTATTAATGATTTTTTTGTTAAATATATGTTTGATTTTAATAA CATAAAAGAAAAAAATTTTTTTAAGAATGGAGTACATGCAAAAATTTTAGGTAAATTATCATTACCTTTGTTTGATAATT TTTATAATAAAATTTTTTTAAAAATTCATCAATATACATCATTTAAAAATTTATTTAATTTAGTTATACATAATGTTTTA GAATTGGGGTTTGGTTCTTCTTTAGGTAAAAATGTTTATCCTTTTTACGAAAATTATAAATTTTCTAAAAAAAATTTAAG AAGTGGTTTTAAAGATAATTCTATTGGTCCTACAGCTATATATTATAAATTAAATTATAATAATATTCAGAATAAAGAAA TGTTACGTACATCTAAATTTTATCCTTCTACTGATTATTTAGGCGGAAATGAAATAATACATTTAAATACAGAATTATTA TTCCCTAAAGTAAAAGTTTTATATAATTTTTTTAAATGTTTTCAAATTGGATTTTTTTCTGATATTATTAGAATTGTAGA TCATCAATGGGATAATAGAATGTTATTATATTCAATTAATAAAAAAATGAACTTCATTAATCCTAATAAACTTTATTTTT CAGTTGGCTCATTTGCTAGACTTATTACTTCTTTAGGACCAATATCAGTAACATTTTCTTTACCTATATGTCCTAATGAT TTTTCTGATAGTTGTTTTAAAAAATTTATGTATTGA
Upstream 100 bases:
>100_bases TAATTTTATTAATAATAATATTTTAATTTTTAAGAAATAAACATGTTTATTAATATTAATAATTAGTAATTATTATTTTA TATAGGAATATGGTTTAAAT
Downstream 100 bases:
>100_bases TTTTTTTTAATTTTATTTAAATATTAAATATTTAAAAAATTTATTAAAATTAAATAAAAAGAGTTATTTATGAAAAATAT AAAAAAAAAAATAAGCTTAA
Product: YaeT
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 571; Mature: 571
Protein sequence:
>571_residues MLLKKIFFIFFLLFSTSVSAGNISNGKNIYIKKNKNFYCLNILKSIKLNFLNYSKNFHLYKNKKKILKLNNYINFSKNNF FSLNKFNFLKFFNNKKIVNEIFFLNYFKNFYIKNNINNTIFLKKIISLHKLFFFHKNHNKKYLSNSFFLKNKFNNICNIN FLNYKNNYIQKKLNIFKNFNFKNIFNRRNIKNFHISTSYDKDKGLFLQLLLLEKNIFNTNNELYFRILKNFIDTKINIYL IKSLTSFKDFFLKSDAFINHFKENNYSKKNYINKLFGFCSLLSSPIKNNKKFSMSLGYQNIKLSYISPHINLFQYLSSIS KKFSLKTKRNTFFINDFFVKYMFDFNNIKEKNFFKNGVHAKILGKLSLPLFDNFYNKIFLKIHQYTSFKNLFNLVIHNVL ELGFGSSLGKNVYPFYENYKFSKKNLRSGFKDNSIGPTAIYYKLNYNNIQNKEMLRTSKFYPSTDYLGGNEIIHLNTELL FPKVKVLYNFFKCFQIGFFSDIIRIVDHQWDNRMLLYSINKKMNFINPNKLYFSVGSFARLITSLGPISVTFSLPICPND FSDSCFKKFMY
Sequences:
>Translated_571_residues MLLKKIFFIFFLLFSTSVSAGNISNGKNIYIKKNKNFYCLNILKSIKLNFLNYSKNFHLYKNKKKILKLNNYINFSKNNF FSLNKFNFLKFFNNKKIVNEIFFLNYFKNFYIKNNINNTIFLKKIISLHKLFFFHKNHNKKYLSNSFFLKNKFNNICNIN FLNYKNNYIQKKLNIFKNFNFKNIFNRRNIKNFHISTSYDKDKGLFLQLLLLEKNIFNTNNELYFRILKNFIDTKINIYL IKSLTSFKDFFLKSDAFINHFKENNYSKKNYINKLFGFCSLLSSPIKNNKKFSMSLGYQNIKLSYISPHINLFQYLSSIS KKFSLKTKRNTFFINDFFVKYMFDFNNIKEKNFFKNGVHAKILGKLSLPLFDNFYNKIFLKIHQYTSFKNLFNLVIHNVL ELGFGSSLGKNVYPFYENYKFSKKNLRSGFKDNSIGPTAIYYKLNYNNIQNKEMLRTSKFYPSTDYLGGNEIIHLNTELL FPKVKVLYNFFKCFQIGFFSDIIRIVDHQWDNRMLLYSINKKMNFINPNKLYFSVGSFARLITSLGPISVTFSLPICPND FSDSCFKKFMY >Mature_571_residues MLLKKIFFIFFLLFSTSVSAGNISNGKNIYIKKNKNFYCLNILKSIKLNFLNYSKNFHLYKNKKKILKLNNYINFSKNNF FSLNKFNFLKFFNNKKIVNEIFFLNYFKNFYIKNNINNTIFLKKIISLHKLFFFHKNHNKKYLSNSFFLKNKFNNICNIN FLNYKNNYIQKKLNIFKNFNFKNIFNRRNIKNFHISTSYDKDKGLFLQLLLLEKNIFNTNNELYFRILKNFIDTKINIYL IKSLTSFKDFFLKSDAFINHFKENNYSKKNYINKLFGFCSLLSSPIKNNKKFSMSLGYQNIKLSYISPHINLFQYLSSIS KKFSLKTKRNTFFINDFFVKYMFDFNNIKEKNFFKNGVHAKILGKLSLPLFDNFYNKIFLKIHQYTSFKNLFNLVIHNVL ELGFGSSLGKNVYPFYENYKFSKKNLRSGFKDNSIGPTAIYYKLNYNNIQNKEMLRTSKFYPSTDYLGGNEIIHLNTELL FPKVKVLYNFFKCFQIGFFSDIIRIVDHQWDNRMLLYSINKKMNFINPNKLYFSVGSFARLITSLGPISVTFSLPICPND FSDSCFKKFMY
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=375, Percent_Identity=24.5333333333333, Blast_Score=133, Evalue=3e-32,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 68419; Mature: 68419
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLKKIFFIFFLLFSTSVSAGNISNGKNIYIKKNKNFYCLNILKSIKLNFLNYSKNFHLY CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEHHHHHHHEEEEECCCEEEE KNKKKILKLNNYINFSKNNFFSLNKFNFLKFFNNKKIVNEIFFLNYFKNFYIKNNINNTI ECCCCEEEECCEEEECCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCCHH FLKKIISLHKLFFFHKNHNKKYLSNSFFLKNKFNNICNINFLNYKNNYIQKKLNIFKNFN HHHHHHHHHHHHHEECCCCCCHHCCCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCC FKNIFNRRNIKNFHISTSYDKDKGLFLQLLLLEKNIFNTNNELYFRILKNFIDTKINIYL HHHHHCCCCCCEEEEECCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE IKSLTSFKDFFLKSDAFINHFKENNYSKKNYINKLFGFCSLLSSPIKNNKKFSMSLGYQN EEHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCE IKLSYISPHINLFQYLSSISKKFSLKTKRNTFFINDFFVKYMFDFNNIKEKNFFKNGVHA EEEEEECCCHHHHHHHHHHHHHHEEEECCCEEEEHHHHHHHHHCCCCCCHHHHHCCCCCE KILGKLSLPLFDNFYNKIFLKIHQYTSFKNLFNLVIHNVLELGFGSSLGKNVYPFYENYK EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC FSKKNLRSGFKDNSIGPTAIYYKLNYNNIQNKEMLRTSKFYPSTDYLGGNEIIHLNTELL CCHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHH FPKVKVLYNFFKCFQIGFFSDIIRIVDHQWDNRMLLYSINKKMNFINPNKLYFSVGSFAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHHHH LITSLGPISVTFSLPICPNDFSDSCFKKFMY HHHCCCCEEEEEEECCCCCCCCHHHHHHHCC >Mature Secondary Structure MLLKKIFFIFFLLFSTSVSAGNISNGKNIYIKKNKNFYCLNILKSIKLNFLNYSKNFHLY CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEEHHHHHHHEEEEECCCEEEE KNKKKILKLNNYINFSKNNFFSLNKFNFLKFFNNKKIVNEIFFLNYFKNFYIKNNINNTI ECCCCEEEECCEEEECCCCEEEECCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCCHH FLKKIISLHKLFFFHKNHNKKYLSNSFFLKNKFNNICNINFLNYKNNYIQKKLNIFKNFN HHHHHHHHHHHHHEECCCCCCHHCCCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCC FKNIFNRRNIKNFHISTSYDKDKGLFLQLLLLEKNIFNTNNELYFRILKNFIDTKINIYL HHHHHCCCCCCEEEEECCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE IKSLTSFKDFFLKSDAFINHFKENNYSKKNYINKLFGFCSLLSSPIKNNKKFSMSLGYQN EEHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCE IKLSYISPHINLFQYLSSISKKFSLKTKRNTFFINDFFVKYMFDFNNIKEKNFFKNGVHA EEEEEECCCHHHHHHHHHHHHHHEEEECCCEEEEHHHHHHHHHCCCCCCHHHHHCCCCCE KILGKLSLPLFDNFYNKIFLKIHQYTSFKNLFNLVIHNVLELGFGSSLGKNVYPFYENYK EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC FSKKNLRSGFKDNSIGPTAIYYKLNYNNIQNKEMLRTSKFYPSTDYLGGNEIIHLNTELL CCHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHH FPKVKVLYNFFKCFQIGFFSDIIRIVDHQWDNRMLLYSINKKMNFINPNKLYFSVGSFAR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHHHH LITSLGPISVTFSLPICPNDFSDSCFKKFMY HHHCCCCEEEEEEECCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA