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The map label for this gene is csp [H]

Identifier: 116494185

GI number: 116494185

Start: 634498

End: 634698

Strand: Direct

Name: csp [H]

Synonym: LSEI_0636

Alternate gene names: 116494185

Gene position: 634498-634698 (Clockwise)

Preceding gene: 116494183

Following gene: 116494192

Centisome position: 21.92

GC content: 46.77

Gene sequence:

>201_bases
ATGCAAAAAGGTACAGTTAAATGGTTCAACGCTGATAAGGGTTACGGCTTCATCACTGGTGAAGACGGCCAAGACGTCTT
TGTACATTTCAGCGCCATCAATGGCGAAGGCTACAAGAGTCTTGACGAAGGTCAGGCTGTTTCCTACGATGTAGAACAAT
CTGATCGTGGCCCTCAGGCTGCTAACGTTACCAAGCTTTAA

Upstream 100 bases:

>100_bases
ACATGGTAATACTTGAACGGGAAACATCATGTTACGTGAATTTCCTTTTTAGGATTACGGTTGTCTGTTGTTGTTAGTTT
TGAAAAGGAGATTCATTTTC

Downstream 100 bases:

>100_bases
TTCTTGGTTCGTTAAAGGAGATCCAATCGGGAAACCGATTGGGTCTTTTTTTATGAGCGCAAACAGGAGCACCTATATTC
AGGCTTTTGCGACTGCGACA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MQKGTVKWFNADKGYGFITGEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDRGPQAANVTKL

Sequences:

>Translated_66_residues
MQKGTVKWFNADKGYGFITGEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDRGPQAANVTKL
>Mature_66_residues
MQKGTVKWFNADKGYGFITGEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDRGPQAANVTKL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=68.75, Blast_Score=92, Evalue=9e-21,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=59.375, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=60, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=58.4615384615385, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=60.655737704918, Blast_Score=79, Evalue=4e-17,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=53.125, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=47.7611940298507, Blast_Score=71, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983225, Length=55, Percent_Identity=49.0909090909091, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983217, Length=55, Percent_Identity=49.0909090909091, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7203; Mature: 7203

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKGTVKWFNADKGYGFITGEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDRGPQA
CCCCCEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
ANVTKL
CCEECC
>Mature Secondary Structure
MQKGTVKWFNADKGYGFITGEDGQDVFVHFSAINGEGYKSLDEGQAVSYDVEQSDRGPQA
CCCCCEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
ANVTKL
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139925; 12566566 [H]