| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494094
Identifier: 116494094
GI number: 116494094
Start: 533639
End: 534235
Strand: Direct
Name: 116494094
Synonym: LSEI_0537
Alternate gene names: NA
Gene position: 533639-534235 (Clockwise)
Preceding gene: 116494093
Following gene: 116494095
Centisome position: 18.43
GC content: 43.38
Gene sequence:
>597_bases GTGGCAACAAAGTTTGACGCTGTTGAAGCACGTAAACGCCAAAAAGAGGCAGCAAAGAAAAAGGAACGCAAGGATGGTGT TGGTCGTATTTATCCGGTGGTTGGTATCACTAATTCTGGCTACATTAAGCTGGCTCACAATGGTCTCATGTTTTATGCGG ACATATTCAAGCCCAAAAGCTTTGACTTGTTTGAACTGTCCGTTCAAGACGCTGATCAAATTGAGAGTGAGCTTTGGGGG TTACATCAACAATACCCTGGTTCGATCAAGGAACTATACATGAATTTTCCAGAGACCAACCAACGTCAACAGACTTATTT CCGGCGGAAAATTGAGCAGACTCGTAATCCTATTTATCTTGAGCTGTTGCAACACGATCTAGCTGTTCTTAAGCAGCTAG AAAAAACCTATCGCAAGCTAAGCAGTTGGATCTGGTTCTTTGGCGACAGTGTGCCGGAGCTAGAAAGAAATCTCGAATTA GCTAGGCATGCTTCAACGCTTTATACCTTTGAGCGTGCAGGACTTGCCGAAAAGGAGAAGATGTTACAAATGATGAATAA TCCGGAGGTGAGTGTTAGTGAAACTGAAGAAGCTTGA
Upstream 100 bases:
>100_bases AACTTGCAGGTCATGAAACAGTTGTTACTGCGCAAGCGGGTCATTTACCATGCGATTGACGATCCAATTAGACAACTATT ATTCAAGCGAGGTGAGCATC
Downstream 100 bases:
>100_bases TTTAGATCAGCACTTTGTTTTTAAAACGCAACCTGCAGGTGGTATTGATACGCGCAACGAACTTTATCTGAATATGGGTG ATCACTATATGACGACGATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MATKFDAVEARKRQKEAAKKKERKDGVGRIYPVVGITNSGYIKLAHNGLMFYADIFKPKSFDLFELSVQDADQIESELWG LHQQYPGSIKELYMNFPETNQRQQTYFRRKIEQTRNPIYLELLQHDLAVLKQLEKTYRKLSSWIWFFGDSVPELERNLEL ARHASTLYTFERAGLAEKEKMLQMMNNPEVSVSETEEA
Sequences:
>Translated_198_residues MATKFDAVEARKRQKEAAKKKERKDGVGRIYPVVGITNSGYIKLAHNGLMFYADIFKPKSFDLFELSVQDADQIESELWG LHQQYPGSIKELYMNFPETNQRQQTYFRRKIEQTRNPIYLELLQHDLAVLKQLEKTYRKLSSWIWFFGDSVPELERNLEL ARHASTLYTFERAGLAEKEKMLQMMNNPEVSVSETEEA >Mature_197_residues ATKFDAVEARKRQKEAAKKKERKDGVGRIYPVVGITNSGYIKLAHNGLMFYADIFKPKSFDLFELSVQDADQIESELWGL HQQYPGSIKELYMNFPETNQRQQTYFRRKIEQTRNPIYLELLQHDLAVLKQLEKTYRKLSSWIWFFGDSVPELERNLELA RHASTLYTFERAGLAEKEKMLQMMNNPEVSVSETEEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23219; Mature: 23088
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATKFDAVEARKRQKEAAKKKERKDGVGRIYPVVGITNSGYIKLAHNGLMFYADIFKPKS CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCEEEEEECCCCCC FDLFELSVQDADQIESELWGLHQQYPGSIKELYMNFPETNQRQQTYFRRKIEQTRNPIYL CCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH ELLQHDLAVLKQLEKTYRKLSSWIWFFGDSVPELERNLELARHASTLYTFERAGLAEKEK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH MLQMMNNPEVSVSETEEA HHHHHCCCCCCCCCCCCC >Mature Secondary Structure ATKFDAVEARKRQKEAAKKKERKDGVGRIYPVVGITNSGYIKLAHNGLMFYADIFKPKS CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCEEEEEECCCCCC FDLFELSVQDADQIESELWGLHQQYPGSIKELYMNFPETNQRQQTYFRRKIEQTRNPIYL CCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH ELLQHDLAVLKQLEKTYRKLSSWIWFFGDSVPELERNLELARHASTLYTFERAGLAEKEK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH MLQMMNNPEVSVSETEEA HHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA