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The map label for this gene is rnpA

Identifier: 116493572

GI number: 116493572

Start: 1831301

End: 1831660

Strand: Reverse

Name: rnpA

Synonym: PEPE_1846

Alternate gene names: 116493572

Gene position: 1831660-1831301 (Counterclockwise)

Preceding gene: 116493573

Following gene: 116493571

Centisome position: 99.96

GC content: 36.11

Gene sequence:

>360_bases
ATGCGAAAGTCGTATCGAATCAAAAAAGAACTTGAGTTTCAAAAGGTCTTTGAAACTCGTAATTCATTTGCAAATAAAAA
ATTTGTCGTTTACGTGATGGACAAACCAGAACAACCTCACTTTAGGGTTGGAATTTCCGTTGGGAAAAAAATCGGTAATG
CGGTAATGCGTAATTATACAAAACGTCGAATTCGTCAAAGCATTTTGGAATTCAAGCCTCTTTTACGTCAAGACGTCGAT
TTTTTAGTTATAGCACGTCCACAAGCTTCTGGACTACCAATGAATGAAGTTAAACAACAATTGGAACATGTTTTTAAGCT
AGCAGGGTTGTTTGCTTCAAAACAAAGTGAGGAAGAATAG

Upstream 100 bases:

>100_bases
ATCCCAGTGGTCTTTTATTTTTTAAATTTTTAGAGACAATAGAAGCTTTTTTACATATAATGTTTGTTAGTGATATATAT
ATAGGTTGTGGAGAGAAATA

Downstream 100 bases:

>100_bases
TGAAACATTTAAAACGAAATATGGCGTTGCTCAGTGTGGCAGCCCTATCCTTCATATTAACTGCGTGTAGCACAGCGCCC
ATCACCAGTCACAGTACTGG

Product: RNase P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MRKSYRIKKELEFQKVFETRNSFANKKFVVYVMDKPEQPHFRVGISVGKKIGNAVMRNYTKRRIRQSILEFKPLLRQDVD
FLVIARPQASGLPMNEVKQQLEHVFKLAGLFASKQSEEE

Sequences:

>Translated_119_residues
MRKSYRIKKELEFQKVFETRNSFANKKFVVYVMDKPEQPHFRVGISVGKKIGNAVMRNYTKRRIRQSILEFKPLLRQDVD
FLVIARPQASGLPMNEVKQQLEHVFKLAGLFASKQSEEE
>Mature_119_residues
MRKSYRIKKELEFQKVFETRNSFANKKFVVYVMDKPEQPHFRVGISVGKKIGNAVMRNYTKRRIRQSILEFKPLLRQDVD
FLVIARPQASGLPMNEVKQQLEHVFKLAGLFASKQSEEE

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_PEDPA (Q03D57)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_805307.1
- ProteinModelPortal:   Q03D57
- SMR:   Q03D57
- STRING:   Q03D57
- GeneID:   4417375
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1846
- NMPDR:   fig|278197.10.peg.1636
- eggNOG:   COG0594
- HOGENOM:   HBG728160
- OMA:   KIGNAVM
- BioCyc:   PPEN278197:PEPE_1846-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 14017; Mature: 14017

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSYRIKKELEFQKVFETRNSFANKKFVVYVMDKPEQPHFRVGISVGKKIGNAVMRNYT
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH
KRRIRQSILEFKPLLRQDVDFLVIARPQASGLPMNEVKQQLEHVFKLAGLFASKQSEEE
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRKSYRIKKELEFQKVFETRNSFANKKFVVYVMDKPEQPHFRVGISVGKKIGNAVMRNYT
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHH
KRRIRQSILEFKPLLRQDVDFLVIARPQASGLPMNEVKQQLEHVFKLAGLFASKQSEEE
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA