| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is mnmG
Identifier: 116493569
GI number: 116493569
Start: 1826849
End: 1828762
Strand: Reverse
Name: mnmG
Synonym: PEPE_1843
Alternate gene names: 116493569
Gene position: 1828762-1826849 (Counterclockwise)
Preceding gene: 116493570
Following gene: 116493568
Centisome position: 99.8
GC content: 41.8
Gene sequence:
>1914_bases ATGTCTGAAGTAAAACAATATGAAGGTCGCGAGTATGACGTAATTGTAGTAGGAGCTGGACATGCTGGCTCGGAAGCGGC GCTCGCTGCCGCTCGAATGGGTAATAAAACCCTCTTAATGACCATTAATCTCGACATGGTGGCATTTATGCCATGTAACC CTTCCATTGGTGGTCCAGCCAAAGGAATTGTTGTCCGAGAAATTGATGCATTAGGCGGCGAAATGGGTCGCAATATTGAT AAAACTTATGTTCAAATGCGGATGTTAAATACCGGAAAAGGCCCAGCGGTGCGCGCGCTGCGCGCGCAGGCTGATAAGCA TGCTTATCATGCTGAGATGAAAAAGACCATCGAAGCTGAACCTAATTTGACTTTGCGTCAAGGAATTGTAGATGACTTAA TTGTTGAAGATGGGGTCTGCAAGGGAGTTATTACTAACACCGGCGCCCGTTATCAAGCTAAAAGTGTTGTTCTAACATTA GGGACAGCTGCTCGCGGTAAAATTATCATTGGTGAACTTCAATATTCATCCGGTCCTAACAATTCTCAAGCTGCGCTAGA GTTAACCAAAAACTTGACCGAAAAATATCACTTTGACTTAGAGCGCTTCAAGACGGGGACACCTCCTCGAGTTGATGGCG GAACTATCAACTACGATGAAACCGAAGAACAACCCGGTGATGAAGTTCCTAATCATTTTAGTTTCCAAACACCAGATAGT AAGTACATTGAACTTAAAAACCAATTATCTTGCTGGTTGACTTACACAAATGAAAAAACTCATGAAATCATTCGCGAGAA TTTAGATCGAGCTCCCATGTTTTCAGGAATGATTGAAGGTGTCGGACCTCGTTACTGCCCTTCAATCGAAGATAAGATTG TTCGTTTTGCGGACAAGAGTCGTCACCAGTTGTTCCTTGAACCAGAAGGCCGTAAAACTGACGAATGGTATGTCCAAGGA CTTTCAACTTCAATGCCTGAAGAAGTGCAGCAACAAATTTTGCATTCCATTAAGGGGCTAGAAGAAGCTGAAATGATGCG TCCCGGATATGCGATCGAATACGATGTGGTAGCACCTTATCAATTGAAGAACACTTTGGAAACTAAACTAGTAAAGAATT TATATACTGCTGGTCAAACTAACGGAACATCAGGATATGAAGAAGCTGCTGGTCAAGGTCTAATTGCAGGGATTAATGCT GGCCGTCGGGCCCTAGGTAAGGAGCCTTTAACGCTGAAACGTAGTGATGCTTACATCGGTGTAATGATCGATGATTTGGT AACTAAGGGTACTAAAGAGCCTTATCGTTTGTTGACCAGTCGTGCAGAATATCGTTTAATTTTACGTCATGATAATGCTG ATTTACGCTTAACAGAAGTGGGACATAACTTAGGTTTGGTTAGTGACGAAGAATATAATGCATTCCTTGAAAAGAAACAA GATATTAAGGATGAACTACAACGTCTGTCAGAAATTCGAATTAAACCTAGTCAAGTTCAAAAATTCCTAGAGTCAAAGGG TTCTAACGGCTTAAAAGATGGGGTTTTAGCATCAGAATTTCTACGGCGTCCGGAAGTTAACTATAGTGACTTATTGAAGT TCATTGATGCTCCAGAAAAAGATTTAGATCGTCGAGTAATTGAACAGGTCGAAATCGAAACTAAATATGCTGGATATATT AAAAAGGCTCAAGATCGGGTGGATCGTTTGAAGCGGATGGAAGAAAAGGCTATCCCAGATCGGATTGATTATGAAGCTAT TAATGGATTGGCCACTGAAGGTCGCCAAAAACTCGAAAAAATCCGTCCAACTACCATTGCACAGGCTTCACGGATTAGCG GGGTAACACCAGCTGACATTGCAATTTTGAGTGTTTATATCCAACAAGGAAAAATCGCAAAAATCGCAGAATAA
Upstream 100 bases:
>100_bases ATTTATTGGGTGAAATTACTGGTGATAGTTACCAAGACGAATTATTAGATCAGTTATTTAGTCAATTTTGTTTAGGAAAA TAAATTTGGAGTTGAAAAAT
Downstream 100 bases:
>100_bases CAAAAATTAGCCCCTTGAAAAATTCAAGGAGCTTTTTTTGTTTCACAAAAAAGAATGTTTCACGTGAAACTGAAAAAAAT TAATGTTAGTTCTGCTAAAA
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A
Number of amino acids: Translated: 637; Mature: 636
Protein sequence:
>637_residues MSEVKQYEGREYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPAKGIVVREIDALGGEMGRNID KTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAEPNLTLRQGIVDDLIVEDGVCKGVITNTGARYQAKSVVLTL GTAARGKIIIGELQYSSGPNNSQAALELTKNLTEKYHFDLERFKTGTPPRVDGGTINYDETEEQPGDEVPNHFSFQTPDS KYIELKNQLSCWLTYTNEKTHEIIRENLDRAPMFSGMIEGVGPRYCPSIEDKIVRFADKSRHQLFLEPEGRKTDEWYVQG LSTSMPEEVQQQILHSIKGLEEAEMMRPGYAIEYDVVAPYQLKNTLETKLVKNLYTAGQTNGTSGYEEAAGQGLIAGINA GRRALGKEPLTLKRSDAYIGVMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLTEVGHNLGLVSDEEYNAFLEKKQ DIKDELQRLSEIRIKPSQVQKFLESKGSNGLKDGVLASEFLRRPEVNYSDLLKFIDAPEKDLDRRVIEQVEIETKYAGYI KKAQDRVDRLKRMEEKAIPDRIDYEAINGLATEGRQKLEKIRPTTIAQASRISGVTPADIAILSVYIQQGKIAKIAE
Sequences:
>Translated_637_residues MSEVKQYEGREYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPAKGIVVREIDALGGEMGRNID KTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAEPNLTLRQGIVDDLIVEDGVCKGVITNTGARYQAKSVVLTL GTAARGKIIIGELQYSSGPNNSQAALELTKNLTEKYHFDLERFKTGTPPRVDGGTINYDETEEQPGDEVPNHFSFQTPDS KYIELKNQLSCWLTYTNEKTHEIIRENLDRAPMFSGMIEGVGPRYCPSIEDKIVRFADKSRHQLFLEPEGRKTDEWYVQG LSTSMPEEVQQQILHSIKGLEEAEMMRPGYAIEYDVVAPYQLKNTLETKLVKNLYTAGQTNGTSGYEEAAGQGLIAGINA GRRALGKEPLTLKRSDAYIGVMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLTEVGHNLGLVSDEEYNAFLEKKQ DIKDELQRLSEIRIKPSQVQKFLESKGSNGLKDGVLASEFLRRPEVNYSDLLKFIDAPEKDLDRRVIEQVEIETKYAGYI KKAQDRVDRLKRMEEKAIPDRIDYEAINGLATEGRQKLEKIRPTTIAQASRISGVTPADIAILSVYIQQGKIAKIAE >Mature_636_residues SEVKQYEGREYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPAKGIVVREIDALGGEMGRNIDK TYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAEPNLTLRQGIVDDLIVEDGVCKGVITNTGARYQAKSVVLTLG TAARGKIIIGELQYSSGPNNSQAALELTKNLTEKYHFDLERFKTGTPPRVDGGTINYDETEEQPGDEVPNHFSFQTPDSK YIELKNQLSCWLTYTNEKTHEIIRENLDRAPMFSGMIEGVGPRYCPSIEDKIVRFADKSRHQLFLEPEGRKTDEWYVQGL STSMPEEVQQQILHSIKGLEEAEMMRPGYAIEYDVVAPYQLKNTLETKLVKNLYTAGQTNGTSGYEEAAGQGLIAGINAG RRALGKEPLTLKRSDAYIGVMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLTEVGHNLGLVSDEEYNAFLEKKQD IKDELQRLSEIRIKPSQVQKFLESKGSNGLKDGVLASEFLRRPEVNYSDLLKFIDAPEKDLDRRVIEQVEIETKYAGYIK KAQDRVDRLKRMEEKAIPDRIDYEAINGLATEGRQKLEKIRPTTIAQASRISGVTPADIAILSVYIQQGKIAKIAE
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family
Homologues:
Organism=Homo sapiens, GI74024895, Length=633, Percent_Identity=42.3380726698262, Blast_Score=443, Evalue=1e-124, Organism=Homo sapiens, GI19882217, Length=658, Percent_Identity=40.7294832826748, Blast_Score=429, Evalue=1e-120, Organism=Homo sapiens, GI183227703, Length=673, Percent_Identity=39.8216939078752, Blast_Score=424, Evalue=1e-118, Organism=Escherichia coli, GI2367273, Length=627, Percent_Identity=49.9202551834131, Blast_Score=607, Evalue=1e-175, Organism=Caenorhabditis elegans, GI17534255, Length=620, Percent_Identity=39.6774193548387, Blast_Score=446, Evalue=1e-125, Organism=Saccharomyces cerevisiae, GI6321202, Length=625, Percent_Identity=41.28, Blast_Score=452, Evalue=1e-128, Organism=Drosophila melanogaster, GI24658174, Length=640, Percent_Identity=41.25, Blast_Score=439, Evalue=1e-123,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MNMG_PEDPA (Q03D60)
Other databases:
- EMBL: CP000422 - RefSeq: YP_805304.1 - ProteinModelPortal: Q03D60 - SMR: Q03D60 - STRING: Q03D60 - GeneID: 4417372 - GenomeReviews: CP000422_GR - KEGG: ppe:PEPE_1843 - NMPDR: fig|278197.10.peg.1633 - eggNOG: COG0445 - HOGENOM: HBG284774 - OMA: GIQFRVL - PhylomeDB: Q03D60 - ProtClustDB: PRK05192 - BioCyc: PPEN278197:PEPE_1843-MONOMER - GO: GO:0005737 - HAMAP: MF_00129 - InterPro: IPR013027 - InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 - PRINTS: PR00368 - TIGRFAMs: TIGR00136
Pfam domain/function: PF01134 GIDA
EC number: NA
Molecular weight: Translated: 71106; Mature: 70975
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEVKQYEGREYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPA CCCCHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCEEEEECCCCCCCCCC KGIVVREIDALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAE CCEEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC PNLTLRQGIVDDLIVEDGVCKGVITNTGARYQAKSVVLTLGTAARGKIIIGELQYSSGPN CCCHHHHHHHHHHHHCCCCCCCHHCCCCCCEEECEEEEEECCCCCCEEEEEEEEECCCCC NSQAALELTKNLTEKYHFDLERFKTGTPPRVDGGTINYDETEEQPGDEVPNHFSFQTPDS CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC KYIELKNQLSCWLTYTNEKTHEIIRENLDRAPMFSGMIEGVGPRYCPSIEDKIVRFADKS HHHHCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCC RHQLFLEPEGRKTDEWYVQGLSTSMPEEVQQQILHSIKGLEEAEMMRPGYAIEYDVVAPY CCEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCH QLKNTLETKLVKNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGKEPLTLKRSDAYIG HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEECCHHHHHHCCCCCEEEECCCEEE VMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLTEVGHNLGLVSDEEYNAFLEKKQ EEHHHHHHCCCCCHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHH DIKDELQRLSEIRIKPSQVQKFLESKGSNGLKDGVLASEFLRRPEVNYSDLLKFIDAPEK HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHH DLDRRVIEQVEIETKYAGYIKKAQDRVDRLKRMEEKAIPDRIDYEAINGLATEGRQKLEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH IRPTTIAQASRISGVTPADIAILSVYIQQGKIAKIAE HCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SEVKQYEGREYDVIVVGAGHAGSEAALAAARMGNKTLLMTINLDMVAFMPCNPSIGGPA CCCHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCEEEEECCCCCCCCCC KGIVVREIDALGGEMGRNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHAEMKKTIEAE CCEEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC PNLTLRQGIVDDLIVEDGVCKGVITNTGARYQAKSVVLTLGTAARGKIIIGELQYSSGPN CCCHHHHHHHHHHHHCCCCCCCHHCCCCCCEEECEEEEEECCCCCCEEEEEEEEECCCCC NSQAALELTKNLTEKYHFDLERFKTGTPPRVDGGTINYDETEEQPGDEVPNHFSFQTPDS CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC KYIELKNQLSCWLTYTNEKTHEIIRENLDRAPMFSGMIEGVGPRYCPSIEDKIVRFADKS HHHHCCCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCC RHQLFLEPEGRKTDEWYVQGLSTSMPEEVQQQILHSIKGLEEAEMMRPGYAIEYDVVAPY CCEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCH QLKNTLETKLVKNLYTAGQTNGTSGYEEAAGQGLIAGINAGRRALGKEPLTLKRSDAYIG HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEECCHHHHHHCCCCCEEEECCCEEE VMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADLRLTEVGHNLGLVSDEEYNAFLEKKQ EEHHHHHHCCCCCHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHH DIKDELQRLSEIRIKPSQVQKFLESKGSNGLKDGVLASEFLRRPEVNYSDLLKFIDAPEK HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHH DLDRRVIEQVEIETKYAGYIKKAQDRVDRLKRMEEKAIPDRIDYEAINGLATEGRQKLEK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH IRPTTIAQASRISGVTPADIAILSVYIQQGKIAKIAE HCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA