| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is yoaA [C]
Identifier: 116493456
GI number: 116493456
Start: 1703675
End: 1706026
Strand: Reverse
Name: yoaA [C]
Synonym: PEPE_1728
Alternate gene names: 116493456
Gene position: 1706026-1703675 (Counterclockwise)
Preceding gene: 116493458
Following gene: 116493455
Centisome position: 93.1
GC content: 37.88
Gene sequence:
>2352_bases ATGAGCGTAACTAAGATAGGAATTCGACAACTAGTTGAATTTATTTTGCGTACGGGTGACTTGAACGCGACGATGAATAG TCAAAATACTGCATTAGAGGGTGCCCGCATCCATCGTAAATTGCAAAAGCAACGTGATGAAAATTACGAAAAAGAATACT ACGTTAAACGAGCCGTTGAAATGGATGGGGAAACTTTTACAATTGAAGGTCGTGCGGATGGAGTAGTTATTGACGATGAC TTGTTTATCGAAGAGATTAAAACTTCGGATCCTACTTTTGAAGAGTTAAGTGAGAACACTAAGACATTGTATTGGAGCCA AGCAAAAGTTTACGGAGCGATTTTGACGCAAGACCTAGACTTCGAAAAAGTGACCATTCAACTGACTTATTATCAACGTC CAACCGACGAAGTGATTGAAAAAAGACAAACATTTACCCGAACAGAACTGACCGAATTTTTTGATGATTTGGTTAGACAA TACGAAAAGTGGATTAAGCTACGCAATGATTGGCGTACTGAACGTAACCAAGCAGCGCGCAAATTAGAATTTCCATTTCC AGAGTATCGAAATGGACAACGAGACCTAGCAGTTGCAGTTTACAAAACTATTTTAACTAAACAACGCCTCTTCGTAGAAG CTCCGACCGGAACGGGAAAAACAGTTTCAACGATGTTTCCGACCATTAAAGCCCTGGGTGAGGAAGTTATTGAACGGATT TTCTATTTGACGGCTAAGCAAAGTACTCAGCACGTCGCCGAAGAAGCTATCGAATTGATGGCTAATCAAGGATTGAGAAT TAAATCCATTACAATTACAGCTAAAGATCGAATTATATTTCCTGAAGAAGTGGATATGAAACCAGAAGAAAATCCATACA TGATTGGGTATTATGATCGAGTAAAGGATGGGATAGAGGACGCCTTAGAAAATGAAGACAAGTTCGACAAAGCTGTTATT CAAACGTATGCGAAGAAGTATATGTTAGATCCTTTCGAATTTTCATTAGATTTATCTTTATTTTGTGACTTAATTATTGG AGATTACAACTATTTGTTTGATCCCATGGTGTATCTCCAGCGCTTTTTTACAATCGAAGACCAAAGTAATTTCTTTTTAA TTGATGAGGCTCATAATTTGGTGTCGCGTTCTAGAGCAATGTATTCAGCGGTGGTAGAGCAGGCTTTGGTAATTCAAGCA CAAGAACTTTTTGAAGCCTCAACTACGGATGTGGACTCAAAACAAGTTAAACGTAGATTGACCCAATTAGATAATGAATT TGAATTGATTCATCAAGCATTTAAAAATCAAACAAAAGATTACATGGTGGAATATAATCCACTAGACGGGCTGGAAAAAG CCATGTTGAACTTCAATGAAGTAGTCCGAGAATGGCTGCCTAAACAGCCTGATAACGATTTAACCAGTACCATTTTGGAT TTGTTTTTTGCCAACAATAAATACATTAAGATCAGTGAATATTTTGATGAAAGTTATCGGATTTTAATTCAAAATCCCGA AGATAATATAAAAATCGAAGAACAGATTCTAGATCCCAGTCCCTATTTAGATGCTTCATTAAAAAAGGGACGCGGGGCGA TTTTCTTTTCTGCTACGTTATCGCCCGTTGAATACTATCAAGAAACTTTGGGAAGTACGGAAGGCTTGATCTTACAGATG GCTTCACCATTCGAAGAAAAACAGCAAAATCTTTTAATTACTAGTTATATTGATACTAGATATGCGGCGCGCCAAAGAAA TTTACCTAACATCATCGCTTCAATCGCAACTCTGGTGGAAGCCAAGACGGGGAACTACTTAATTTTTGGACCATCCTATG CCTATTTAAATCAAATTGCGGATGCATTTCAGGAAATGCATCCTGAAATTGAAGTTCAACTGCAAACTAGCCAGATGAGT ATGGAAGAGCGGACAGCATTTTTAGATGCTTTTCGGACCGAAAAATCGGGAACATTAGTTGGTTTTGCGGTGTTAGGCGG ACTCTTTTCAGAAGGAATTGATTTAATTAACGAGCAACTAATTGGTGTAGGGATTGTAAGTGTAGGATTACCGGGCTTGA GTACAGAAAGAAATTTGCTGAAAGAATATTTTGACGAAAAAAATGGCCATGGATTTGAGTACGCATATCAATTACCTGGA ATGAACCACGTTCTTCAATCAGCGGGGAGATTAATTCGAACTCGACGAGATCGAGGTAATATTTTGTTAATGGATCAAAG ATTTGTCACATCTCGCTATTTAAATTTATTTCCCGGACATTGGAAAAACTACCAAAAAGTAACTTCTGTAAGCGATTTAC AAAAAGCAGTCAAAGCGTTCTGGAAACTGTAG
Upstream 100 bases:
>100_bases CCTAGATTTTGATTACATACCATAAATACGTTTTTAAAATAGAAATTCTAGAAAAGGTTTTATGGGATAATGAAAAAGTT AAGAAATAGAGGTGAGTTGA
Downstream 100 bases:
>100_bases GTAAATCGTTTTAACATATTTTGGACCGCACCACAAGATGTAGTGGATGATTTACGAAAACCTTTTAAAAATCTTTATAT TTTGTATTTACAGACTAATA
Product: Rad3-related DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 782
Protein sequence:
>783_residues MSVTKIGIRQLVEFILRTGDLNATMNSQNTALEGARIHRKLQKQRDENYEKEYYVKRAVEMDGETFTIEGRADGVVIDDD LFIEEIKTSDPTFEELSENTKTLYWSQAKVYGAILTQDLDFEKVTIQLTYYQRPTDEVIEKRQTFTRTELTEFFDDLVRQ YEKWIKLRNDWRTERNQAARKLEFPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTIKALGEEVIERI FYLTAKQSTQHVAEEAIELMANQGLRIKSITITAKDRIIFPEEVDMKPEENPYMIGYYDRVKDGIEDALENEDKFDKAVI QTYAKKYMLDPFEFSLDLSLFCDLIIGDYNYLFDPMVYLQRFFTIEDQSNFFLIDEAHNLVSRSRAMYSAVVEQALVIQA QELFEASTTDVDSKQVKRRLTQLDNEFELIHQAFKNQTKDYMVEYNPLDGLEKAMLNFNEVVREWLPKQPDNDLTSTILD LFFANNKYIKISEYFDESYRILIQNPEDNIKIEEQILDPSPYLDASLKKGRGAIFFSATLSPVEYYQETLGSTEGLILQM ASPFEEKQQNLLITSYIDTRYAARQRNLPNIIASIATLVEAKTGNYLIFGPSYAYLNQIADAFQEMHPEIEVQLQTSQMS MEERTAFLDAFRTEKSGTLVGFAVLGGLFSEGIDLINEQLIGVGIVSVGLPGLSTERNLLKEYFDEKNGHGFEYAYQLPG MNHVLQSAGRLIRTRRDRGNILLMDQRFVTSRYLNLFPGHWKNYQKVTSVSDLQKAVKAFWKL
Sequences:
>Translated_783_residues MSVTKIGIRQLVEFILRTGDLNATMNSQNTALEGARIHRKLQKQRDENYEKEYYVKRAVEMDGETFTIEGRADGVVIDDD LFIEEIKTSDPTFEELSENTKTLYWSQAKVYGAILTQDLDFEKVTIQLTYYQRPTDEVIEKRQTFTRTELTEFFDDLVRQ YEKWIKLRNDWRTERNQAARKLEFPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTIKALGEEVIERI FYLTAKQSTQHVAEEAIELMANQGLRIKSITITAKDRIIFPEEVDMKPEENPYMIGYYDRVKDGIEDALENEDKFDKAVI QTYAKKYMLDPFEFSLDLSLFCDLIIGDYNYLFDPMVYLQRFFTIEDQSNFFLIDEAHNLVSRSRAMYSAVVEQALVIQA QELFEASTTDVDSKQVKRRLTQLDNEFELIHQAFKNQTKDYMVEYNPLDGLEKAMLNFNEVVREWLPKQPDNDLTSTILD LFFANNKYIKISEYFDESYRILIQNPEDNIKIEEQILDPSPYLDASLKKGRGAIFFSATLSPVEYYQETLGSTEGLILQM ASPFEEKQQNLLITSYIDTRYAARQRNLPNIIASIATLVEAKTGNYLIFGPSYAYLNQIADAFQEMHPEIEVQLQTSQMS MEERTAFLDAFRTEKSGTLVGFAVLGGLFSEGIDLINEQLIGVGIVSVGLPGLSTERNLLKEYFDEKNGHGFEYAYQLPG MNHVLQSAGRLIRTRRDRGNILLMDQRFVTSRYLNLFPGHWKNYQKVTSVSDLQKAVKAFWKL >Mature_782_residues SVTKIGIRQLVEFILRTGDLNATMNSQNTALEGARIHRKLQKQRDENYEKEYYVKRAVEMDGETFTIEGRADGVVIDDDL FIEEIKTSDPTFEELSENTKTLYWSQAKVYGAILTQDLDFEKVTIQLTYYQRPTDEVIEKRQTFTRTELTEFFDDLVRQY EKWIKLRNDWRTERNQAARKLEFPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTIKALGEEVIERIF YLTAKQSTQHVAEEAIELMANQGLRIKSITITAKDRIIFPEEVDMKPEENPYMIGYYDRVKDGIEDALENEDKFDKAVIQ TYAKKYMLDPFEFSLDLSLFCDLIIGDYNYLFDPMVYLQRFFTIEDQSNFFLIDEAHNLVSRSRAMYSAVVEQALVIQAQ ELFEASTTDVDSKQVKRRLTQLDNEFELIHQAFKNQTKDYMVEYNPLDGLEKAMLNFNEVVREWLPKQPDNDLTSTILDL FFANNKYIKISEYFDESYRILIQNPEDNIKIEEQILDPSPYLDASLKKGRGAIFFSATLSPVEYYQETLGSTEGLILQMA SPFEEKQQNLLITSYIDTRYAARQRNLPNIIASIATLVEAKTGNYLIFGPSYAYLNQIADAFQEMHPEIEVQLQTSQMSM EERTAFLDAFRTEKSGTLVGFAVLGGLFSEGIDLINEQLIGVGIVSVGLPGLSTERNLLKEYFDEKNGHGFEYAYQLPGM NHVLQSAGRLIRTRRDRGNILLMDQRFVTSRYLNLFPGHWKNYQKVTSVSDLQKAVKAFWKL
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI17554258, Length=288, Percent_Identity=26.7361111111111, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 90698; Mature: 90567
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTKIGIRQLVEFILRTGDLNATMNSQNTALEGARIHRKLQKQRDENYEKEYYVKRAVE CCCHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH MDGETFTIEGRADGVVIDDDLFIEEIKTSDPTFEELSENTKTLYWSQAKVYGAILTQDLD CCCCEEEEECCCCCEEECCHHHHHHHCCCCCCHHHHCCCCCEEEEEHHHHHHHHHHCCCC FEKVTIQLTYYQRPTDEVIEKRQTFTRTELTEFFDDLVRQYEKWIKLRNDWRTERNQAAR CEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLEFPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTIKALGEEVIERI CCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH FYLTAKQSTQHVAEEAIELMANQGLRIKSITITAKDRIIFPEEVDMKPEENPYMIGYYDR HHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEECCCCCCCCCCCCCEEEEEHHH VKDGIEDALENEDKFDKAVIQTYAKKYMLDPFEFSLDLSLFCDLIIGDYNYLFDPMVYLQ HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCHHHHHHHHHHHH RFFTIEDQSNFFLIDEAHNLVSRSRAMYSAVVEQALVIQAQELFEASTTDVDSKQVKRRL HHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH TQLDNEFELIHQAFKNQTKDYMVEYNPLDGLEKAMLNFNEVVREWLPKQPDNDLTSTILD HHCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LFFANNKYIKISEYFDESYRILIQNPEDNIKIEEQILDPSPYLDASLKKGRGAIFFSATL HHHCCCCEEEEHHHHCCCCEEEEECCCCCCEEHHHHCCCCCCCCCHHCCCCCEEEEEECC SPVEYYQETLGSTEGLILQMASPFEEKQQNLLITSYIDTRYAARQRNLPNIIASIATLVE CHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHH AKTGNYLIFGPSYAYLNQIADAFQEMHPEIEVQLQTSQMSMEERTAFLDAFRTEKSGTLV CCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEE GFAVLGGLFSEGIDLINEQLIGVGIVSVGLPGLSTERNLLKEYFDEKNGHGFEYAYQLPG HHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCC MNHVLQSAGRLIRTRRDRGNILLMDQRFVTSRYLNLFPGHWKNYQKVTSVSDLQKAVKAF HHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH WKL HCC >Mature Secondary Structure SVTKIGIRQLVEFILRTGDLNATMNSQNTALEGARIHRKLQKQRDENYEKEYYVKRAVE CCHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH MDGETFTIEGRADGVVIDDDLFIEEIKTSDPTFEELSENTKTLYWSQAKVYGAILTQDLD CCCCEEEEECCCCCEEECCHHHHHHHCCCCCCHHHHCCCCCEEEEEHHHHHHHHHHCCCC FEKVTIQLTYYQRPTDEVIEKRQTFTRTELTEFFDDLVRQYEKWIKLRNDWRTERNQAAR CEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLEFPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTIKALGEEVIERI CCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH FYLTAKQSTQHVAEEAIELMANQGLRIKSITITAKDRIIFPEEVDMKPEENPYMIGYYDR HHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEECCCCCCCCCCCCCEEEEEHHH VKDGIEDALENEDKFDKAVIQTYAKKYMLDPFEFSLDLSLFCDLIIGDYNYLFDPMVYLQ HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCHHHHHHHHHHHH RFFTIEDQSNFFLIDEAHNLVSRSRAMYSAVVEQALVIQAQELFEASTTDVDSKQVKRRL HHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH TQLDNEFELIHQAFKNQTKDYMVEYNPLDGLEKAMLNFNEVVREWLPKQPDNDLTSTILD HHCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LFFANNKYIKISEYFDESYRILIQNPEDNIKIEEQILDPSPYLDASLKKGRGAIFFSATL HHHCCCCEEEEHHHHCCCCEEEEECCCCCCEEHHHHCCCCCCCCCHHCCCCCEEEEEECC SPVEYYQETLGSTEGLILQMASPFEEKQQNLLITSYIDTRYAARQRNLPNIIASIATLVE CHHHHHHHHHCCCCCEEEEECCCHHHHHCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHH AKTGNYLIFGPSYAYLNQIADAFQEMHPEIEVQLQTSQMSMEERTAFLDAFRTEKSGTLV CCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEE GFAVLGGLFSEGIDLINEQLIGVGIVSVGLPGLSTERNLLKEYFDEKNGHGFEYAYQLPG HHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCC MNHVLQSAGRLIRTRRDRGNILLMDQRFVTSRYLNLFPGHWKNYQKVTSVSDLQKAVKAF HHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH WKL HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11029001 [H]