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The map label for this gene is ybhR [H]

Identifier: 116493408

GI number: 116493408

Start: 1658818

End: 1659960

Strand: Reverse

Name: ybhR [H]

Synonym: PEPE_1680

Alternate gene names: 116493408

Gene position: 1659960-1658818 (Counterclockwise)

Preceding gene: 116493409

Following gene: 116493407

Centisome position: 90.59

GC content: 33.42

Gene sequence:

>1143_bases
ATGAGGATTATTGCAATTACAAATCGTGTTTTAAAAGAGTTAATGCGGGATAAACGAACTTTAGCGTTAATGTTTTTAGC
TCCAATTTTAATTTTAGTATTAATGAGTTTTATTTTTAACAATAGCGGTACAACAAATGTGAAAGTAGGAACGGTAGGTA
TTTCACATGAGCTGAACCAAAATTTAAATACGATTAAACATGTAAAAATTCATCAATATGACTCAGAAAAAACGGCGAAA
ATAGCATTAAAAGCTGAAAAGACAGATACAATTATTGAAAAAGACGGCAATAATTTTAATATAACCTATGCTAATACTGA
CGCAACTAAAACAGCCACTACTAAGATGGCGTTCAAAAATGCGGTTACTGTGAATAATATTAAACAGCTTAAAAAACATT
TAGAACAGAGTAACCGGGCTTTAAATGAACTTCAAACGAAGTTAGCTTTAGTTACTAAAAAATCAGTTAAAACCAAAAGC
ATGCCCGCAACTCAAGCTAGTCCGAAAATTAAAAATCATTATGTGTATGGTGATGCTAACACCAGCTTCTTTGATAAGAT
TTTGCCAATTTTAATGGGCTTCTTCGTTTTCTTCTTTGTCTTCCTAGTTTCTGGGATGGCGCTTTTGAAAGAAAGAACAA
GCGGAACTTTAGATCGACTTTTAGCGACTCCAGTTAAACGTTCTGAAATTGTATTTGGCTATATGCTAAGTTATGGGATA
ATTGCTATATTACAAACCATAGTGATCGTATTGGTAACTATTGGATTATTAGGAGTGGAAGTGGTTGGCAATATTGGGAG
CATTATTGTTATCAACTTGCTATTAGCTTTAGTAGCTCTAGCATTTGGAATTCTACTTTCTACTTTTGCCCATTCTGAAT
TCCAGATGATGCAATTTATTCCAATTGTGATAGTACCTCAAGTTTTCTTTGCTGGAATTATTCCGTTAGATACGATGGCT
GATTGGGTTCAAAAAATATCTTATATTATTCCACTTAAGTATGCCGGCGATGCGGTTAGTAATATTATTATGCGAGGAGC
CCGACTTTCAGCTTTGGGGGGAGATATTGGAGTGTTATTAATTTTTCTAGTTATCTTAACTATTTTAAATATCGTTGGAT
TGAAACGATATCGGAAGGTGTAA

Upstream 100 bases:

>100_bases
ACGGAAACGTGATTGCTTTAGATAGCCCTAAAAATTTAAAACGACAATATGATGTACCGTCTATTGAAGATGTCTTTTTG
AAGGCGGAAGGAGCAGAATA

Downstream 100 bases:

>100_bases
ATAATGAGTAGTGCAATCATATTTGATAATTATAAAACGTGGCTTGATGAGCAAAAGCTTCCTAAAGGTCAGAAAAAAGC
TCTTTTAGCAGGGTTAGATT

Product: ABC-type multidrug transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MRIIAITNRVLKELMRDKRTLALMFLAPILILVLMSFIFNNSGTTNVKVGTVGISHELNQNLNTIKHVKIHQYDSEKTAK
IALKAEKTDTIIEKDGNNFNITYANTDATKTATTKMAFKNAVTVNNIKQLKKHLEQSNRALNELQTKLALVTKKSVKTKS
MPATQASPKIKNHYVYGDANTSFFDKILPILMGFFVFFFVFLVSGMALLKERTSGTLDRLLATPVKRSEIVFGYMLSYGI
IAILQTIVIVLVTIGLLGVEVVGNIGSIIVINLLLALVALAFGILLSTFAHSEFQMMQFIPIVIVPQVFFAGIIPLDTMA
DWVQKISYIIPLKYAGDAVSNIIMRGARLSALGGDIGVLLIFLVILTILNIVGLKRYRKV

Sequences:

>Translated_380_residues
MRIIAITNRVLKELMRDKRTLALMFLAPILILVLMSFIFNNSGTTNVKVGTVGISHELNQNLNTIKHVKIHQYDSEKTAK
IALKAEKTDTIIEKDGNNFNITYANTDATKTATTKMAFKNAVTVNNIKQLKKHLEQSNRALNELQTKLALVTKKSVKTKS
MPATQASPKIKNHYVYGDANTSFFDKILPILMGFFVFFFVFLVSGMALLKERTSGTLDRLLATPVKRSEIVFGYMLSYGI
IAILQTIVIVLVTIGLLGVEVVGNIGSIIVINLLLALVALAFGILLSTFAHSEFQMMQFIPIVIVPQVFFAGIIPLDTMA
DWVQKISYIIPLKYAGDAVSNIIMRGARLSALGGDIGVLLIFLVILTILNIVGLKRYRKV
>Mature_380_residues
MRIIAITNRVLKELMRDKRTLALMFLAPILILVLMSFIFNNSGTTNVKVGTVGISHELNQNLNTIKHVKIHQYDSEKTAK
IALKAEKTDTIIEKDGNNFNITYANTDATKTATTKMAFKNAVTVNNIKQLKKHLEQSNRALNELQTKLALVTKKSVKTKS
MPATQASPKIKNHYVYGDANTSFFDKILPILMGFFVFFFVFLVSGMALLKERTSGTLDRLLATPVKRSEIVFGYMLSYGI
IAILQTIVIVLVTIGLLGVEVVGNIGSIIVINLLLALVALAFGILLSTFAHSEFQMMQFIPIVIVPQVFFAGIIPLDTMA
DWVQKISYIIPLKYAGDAVSNIIMRGARLSALGGDIGVLLIFLVILTILNIVGLKRYRKV

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=366, Percent_Identity=21.3114754098361, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787011, Length=147, Percent_Identity=25.1700680272109, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650853, Length=173, Percent_Identity=29.4797687861272, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24650855, Length=173, Percent_Identity=29.4797687861272, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI85725262, Length=181, Percent_Identity=27.0718232044199, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85725260, Length=260, Percent_Identity=25.3846153846154, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42079; Mature: 42079

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIAITNRVLKELMRDKRTLALMFLAPILILVLMSFIFNNSGTTNVKVGTVGISHELNQ
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHC
NLNTIKHVKIHQYDSEKTAKIALKAEKTDTIIEKDGNNFNITYANTDATKTATTKMAFKN
CHHHHHEEEEEECCCCCCEEEEEEECCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHC
AVTVNNIKQLKKHLEQSNRALNELQTKLALVTKKSVKTKSMPATQASPKIKNHYVYGDAN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC
TSFFDKILPILMGFFVFFFVFLVSGMALLKERTSGTLDRLLATPVKRSEIVFGYMLSYGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH
IAILQTIVIVLVTIGLLGVEVVGNIGSIIVINLLLALVALAFGILLSTFAHSEFQMMQFI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
PIVIVPQVFFAGIIPLDTMADWVQKISYIIPLKYAGDAVSNIIMRGARLSALGGDIGVLL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHH
IFLVILTILNIVGLKRYRKV
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRIIAITNRVLKELMRDKRTLALMFLAPILILVLMSFIFNNSGTTNVKVGTVGISHELNQ
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHC
NLNTIKHVKIHQYDSEKTAKIALKAEKTDTIIEKDGNNFNITYANTDATKTATTKMAFKN
CHHHHHEEEEEECCCCCCEEEEEEECCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHC
AVTVNNIKQLKKHLEQSNRALNELQTKLALVTKKSVKTKSMPATQASPKIKNHYVYGDAN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC
TSFFDKILPILMGFFVFFFVFLVSGMALLKERTSGTLDRLLATPVKRSEIVFGYMLSYGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH
IAILQTIVIVLVTIGLLGVEVVGNIGSIIVINLLLALVALAFGILLSTFAHSEFQMMQFI
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
PIVIVPQVFFAGIIPLDTMADWVQKISYIIPLKYAGDAVSNIIMRGARLSALGGDIGVLL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHH
IFLVILTILNIVGLKRYRKV
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]