Click here to switch to the map view.

The map label for this gene is ybgI [C]

Identifier: 116492859

GI number: 116492859

Start: 1095748

End: 1096539

Strand: Reverse

Name: ybgI [C]

Synonym: PEPE_1097

Alternate gene names: 116492859

Gene position: 1096539-1095748 (Counterclockwise)

Preceding gene: 116492860

Following gene: 116492858

Centisome position: 59.84

GC content: 35.48

Gene sequence:

>792_bases
ATGTTAGCTAAAAAATTAATTGACCGTTTTGAAAGCTTCGCGCCTAAAACCATTGCTTTTACTAATGATCCTGTGGGTTT
ACAAATCGGAAATGTTAATAACGATATTAAACGAGTAATGGTGACTTTAGATGTTCGACCTGAAGTGGTTGACGAAGCAA
TTAAACAAAATTGTGATATGATTTTTTCGCACCACCCCTTGATTTTTCGACCTATTAAAAATTTAGATTTAAGCAACCCG
CAAAATCAAATGTACGCTAAATTAATCCAAAATTCGATTTTGGTTTATTCAGCTCATACAAATTTGGACGTTGCTAAAGG
TGGCATGAATGATTGGTTGACGGAAGCAATGGGGTTAAATCATGTCCAAACGGTGTATTCTAACCATTACGATACCAATA
TTGGTCGCATCGGAGTCTTACCAACTCCTGTAACTGTTGAAAAATTTGCTAAAACCTTGAAAAAAACTTTTAACTTAGAT
GGGTTGCGCTTAGTAACAAGTGACAATGAAGCTATGGTAAAAAACGTTGCAGTTGTAGGTGGTGATGGTGGTAAATTTTA
TCCTGAAATGCTCAAAGCGGGAGCAGACGTGTTTGTAACCGGTGATGTTTATTATCATACAGGACATGATATGTTAGCGG
ATGGCATTAATGTAGTCGATGTAGGTCATAACGTCGAAAAAATATGTATTCCTAAGTTAGCTTCTTTATTCAACGAATGG
AAGGCTAATAATGATTGGGAAGTTGAAATTATAGAATCGACGGTTAATACCAATCCTTATCAATTTATCTAA

Upstream 100 bases:

>100_bases
AGAAAAATTGAAGTAAATCTAAATGCTCATCCTAGCCATGGACAAGCTAAACTAGACCAAGTTACTAAGCAAATTAGCGA
TATTGAGGAGATGTTTTCAC

Downstream 100 bases:

>100_bases
AAATTGGGAGGCGATTTAAATGAATCCAGAGAAAATGACTACGGCACTTCAAGAAGCAATTAGCGAAGCACAGCAGATTG
CTGTAAATCGTCAACATCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MLAKKLIDRFESFAPKTIAFTNDPVGLQIGNVNNDIKRVMVTLDVRPEVVDEAIKQNCDMIFSHHPLIFRPIKNLDLSNP
QNQMYAKLIQNSILVYSAHTNLDVAKGGMNDWLTEAMGLNHVQTVYSNHYDTNIGRIGVLPTPVTVEKFAKTLKKTFNLD
GLRLVTSDNEAMVKNVAVVGGDGGKFYPEMLKAGADVFVTGDVYYHTGHDMLADGINVVDVGHNVEKICIPKLASLFNEW
KANNDWEVEIIESTVNTNPYQFI

Sequences:

>Translated_263_residues
MLAKKLIDRFESFAPKTIAFTNDPVGLQIGNVNNDIKRVMVTLDVRPEVVDEAIKQNCDMIFSHHPLIFRPIKNLDLSNP
QNQMYAKLIQNSILVYSAHTNLDVAKGGMNDWLTEAMGLNHVQTVYSNHYDTNIGRIGVLPTPVTVEKFAKTLKKTFNLD
GLRLVTSDNEAMVKNVAVVGGDGGKFYPEMLKAGADVFVTGDVYYHTGHDMLADGINVVDVGHNVEKICIPKLASLFNEW
KANNDWEVEIIESTVNTNPYQFI
>Mature_263_residues
MLAKKLIDRFESFAPKTIAFTNDPVGLQIGNVNNDIKRVMVTLDVRPEVVDEAIKQNCDMIFSHHPLIFRPIKNLDLSNP
QNQMYAKLIQNSILVYSAHTNLDVAKGGMNDWLTEAMGLNHVQTVYSNHYDTNIGRIGVLPTPVTVEKFAKTLKKTFNLD
GLRLVTSDNEAMVKNVAVVGGDGGKFYPEMLKAGADVFVTGDVYYHTGHDMLADGINVVDVGHNVEKICIPKLASLFNEW
KANNDWEVEIIESTVNTNPYQFI

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Homo sapiens, GI215272362, Length=116, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI215272360, Length=116, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI56605983, Length=116, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI209862879, Length=116, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321217, Length=227, Percent_Identity=29.0748898678414, Blast_Score=94, Evalue=1e-20,
Organism=Drosophila melanogaster, GI19921430, Length=247, Percent_Identity=26.7206477732794, Blast_Score=91, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 29367; Mature: 29367

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKKLIDRFESFAPKTIAFTNDPVGLQIGNVNNDIKRVMVTLDVRPEVVDEAIKQNCDM
CCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHCCCCE
IFSHHPLIFRPIKNLDLSNPQNQMYAKLIQNSILVYSAHTNLDVAKGGMNDWLTEAMGLN
EECCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCEECCCCHHHHHHHHHCCH
HVQTVYSNHYDTNIGRIGVLPTPVTVEKFAKTLKKTFNLDGLRLVTSDNEAMVKNVAVVG
HHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHEEEEEEEEE
GDGGKFYPEMLKAGADVFVTGDVYYHTGHDMLADGINVVDVGHNVEKICIPKLASLFNEW
CCCCCCHHHHHHCCCCEEEECEEEEECCCHHHHCCCEEEECCCCCHHHHHHHHHHHHHHH
KANNDWEVEIIESTVNTNPYQFI
CCCCCCEEEEEEECCCCCCEECC
>Mature Secondary Structure
MLAKKLIDRFESFAPKTIAFTNDPVGLQIGNVNNDIKRVMVTLDVRPEVVDEAIKQNCDM
CCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHCCCCE
IFSHHPLIFRPIKNLDLSNPQNQMYAKLIQNSILVYSAHTNLDVAKGGMNDWLTEAMGLN
EECCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCEECCCCHHHHHHHHHCCH
HVQTVYSNHYDTNIGRIGVLPTPVTVEKFAKTLKKTFNLDGLRLVTSDNEAMVKNVAVVG
HHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHEEEEEEEEE
GDGGKFYPEMLKAGADVFVTGDVYYHTGHDMLADGINVVDVGHNVEKICIPKLASLFNEW
CCCCCCHHHHHHCCCCEEEECEEEEECCCHHHHCCCEEEECCCCCHHHHHHHHHHHHHHH
KANNDWEVEIIESTVNTNPYQFI
CCCCCCEEEEEEECCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11463916 [H]