Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

Click here to switch to the map view.

The map label for this gene is 116492761

Identifier: 116492761

GI number: 116492761

Start: 1009511

End: 1009918

Strand: Reverse

Name: 116492761

Synonym: PEPE_0998

Alternate gene names: NA

Gene position: 1009918-1009511 (Counterclockwise)

Preceding gene: 116492762

Following gene: 116492760

Centisome position: 55.11

GC content: 38.97

Gene sequence:

>408_bases
ATGGCAAAAGATAACATAGTCGACCAATTAGAAAACTGGCTTAAAGACGTCCACAAGCTAGTCCCTGACGAAGCTGAACA
AGAGAAAATAACCCAAGCAGGCGCTAAAAAGCTAGCTGATAACTTGACGGAAGTTACGCGAAAGAAGCATTACAGCTCAC
ATAAAGACGAGAAGTACGGACATATGGCTGATAATATAAGTTACAACAGCACTGACATAGACGGTGAACATAATGGTAGA
TCAATTGTCGGGTGGACTAATAAATATCATGATATGAATGCCAGACGTTTAAATGATGGTACTAAACATATTAGAGCTGA
CCATTTTGTTGATGATAATTTAACTGACTCACAAGATGATGTCTTTAACGCCATGCTAGATGAGTATAAGAAGGGTGGCG
ATGACTAA

Upstream 100 bases:

>100_bases
GCAAACTTTACGATGTCATTAATGACAGCATTGATGATTCTAGTAATTATCTATCTTGCGATTATTTAACGCTAAAACAG
GTTACTAAGGGGGCTTAGCT

Downstream 100 bases:

>100_bases
TGCTATTACCAGTATCACAGGTATCCAGTATAGTTAATGCCCTCAATTTAACGTGGCTTGATAAAGTCTACCTGAACGAA
ATACCTAACGAAGATTTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MAKDNIVDQLENWLKDVHKLVPDEAEQEKITQAGAKKLADNLTEVTRKKHYSSHKDEKYGHMADNISYNSTDIDGEHNGR
SIVGWTNKYHDMNARRLNDGTKHIRADHFVDDNLTDSQDDVFNAMLDEYKKGGDD

Sequences:

>Translated_135_residues
MAKDNIVDQLENWLKDVHKLVPDEAEQEKITQAGAKKLADNLTEVTRKKHYSSHKDEKYGHMADNISYNSTDIDGEHNGR
SIVGWTNKYHDMNARRLNDGTKHIRADHFVDDNLTDSQDDVFNAMLDEYKKGGDD
>Mature_134_residues
AKDNIVDQLENWLKDVHKLVPDEAEQEKITQAGAKKLADNLTEVTRKKHYSSHKDEKYGHMADNISYNSTDIDGEHNGRS
IVGWTNKYHDMNARRLNDGTKHIRADHFVDDNLTDSQDDVFNAMLDEYKKGGDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15502; Mature: 15371

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDNIVDQLENWLKDVHKLVPDEAEQEKITQAGAKKLADNLTEVTRKKHYSSHKDEKYG
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCC
HMADNISYNSTDIDGEHNGRSIVGWTNKYHDMNARRLNDGTKHIRADHFVDDNLTDSQDD
CHHCCCCCCCCCCCCCCCCCEEECCCCHHHCCCHHHHCCCHHHHHHHHCCCCCCCCCHHH
VFNAMLDEYKKGGDD
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKDNIVDQLENWLKDVHKLVPDEAEQEKITQAGAKKLADNLTEVTRKKHYSSHKDEKYG
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCC
HMADNISYNSTDIDGEHNGRSIVGWTNKYHDMNARRLNDGTKHIRADHFVDDNLTDSQDD
CHHCCCCCCCCCCCCCCCCCEEECCCCHHHCCCHHHHCCCHHHHHHHHCCCCCCCCCHHH
VFNAMLDEYKKGGDD
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA