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The map label for this gene is fni [H]

Identifier: 116492689

GI number: 116492689

Start: 924317

End: 925300

Strand: Reverse

Name: fni [H]

Synonym: PEPE_0924

Alternate gene names: 116492689

Gene position: 925300-924317 (Counterclockwise)

Preceding gene: 116492690

Following gene: 116492686

Centisome position: 50.5

GC content: 41.97

Gene sequence:

>984_bases
ATGAAAAATATTCATTCTCATCGTAAAGATGAACACATTTCATTGGCTGAAAAATTTTACAGCCCGACTGCCAGTGCTGG
GTTTGATACAATTCGCTTATTACCAAATGCATTACCTGAAACAGGAATTTCAGAGGTTAGTTTAGAAACTACCCTGGCAG
GGCTAAAAATGCCCCTCCCCTTCTTCATTCAGGCTATGACGGGTGGAAGTGCCTACACCGCCAAATTAAATGCACGGCTT
GCTAAAATTGCGCAAGAAACTGATTTAGCGATGGCCGTTGGCTCTCAATCAGTCGCTTTAAAATATCCTGAACTAGCAGA
CACATTTAAAATTGTGCGAGAAACTAATCCCCAAGGATTGATTATGGCGAATGTTGGGGCGGATGCTAGTGTTGCTAAAG
CGCAGGCAGCTGTAGACATGCTTCAAGCGAACGCCCTACAGTTACATATCAATGTTGCTCAGGAGCTAGTTATGCCTGAG
GGTGACCGTACCTTTGATTACCTAGATCATATTGCTGAAATCGTTTCTAACCTGAAAGTACCCGTGATTGTTAAAGCGGT
CGGTGCGGGAATGACTCATCAAGATGCCCTCGCCCTAAAAAAAGTTGGCGTAAAGTTTATTGATGTTGGTGGTCGAGGCG
GTACTAACTTTATTCAAATCGAAAATGCTCGTCGTCACACTAAAGATTTTGATTTTATGACATCGTTTGGTTTAACAACG
GTAGAGTCACTTAAATCAATTACGGTTGATGGCTTGTCAATTACCGCTACTGGCGGTATTCGTAATTCAAGTGATATTAT
TAAAAGTCTGGCTTTAGGGGCTGATAACGTGGGAATTGCGGGCTACTTCCTCCATCAGCTACTCCACCATGACGATGCAT
TTATGGTTGAAATGATTGAGCAGATGAAGTACCAACTAAAGAGCCTCTTGGTACTGTTGGGCGTTAAATCTATCAACGAA
CTTTCTGAGAAAAATTTATTTTAA

Upstream 100 bases:

>100_bases
CCACGAAGACAGCAAAAATGTTTGCTGAATGGGAGAAACATGATATCAAACCCCTTGATTTAGATGTTCACCATGTCACA
GAAATTAATTAGGAGTTGTC

Downstream 100 bases:

>100_bases
AAGTGTCGTTAAATATGTTTTCGATTTTGTCGGGGCATATTTTTATGAGCATCAAATATGATTTAATTACAAAAAACTCC
GTACTGTTATTATTCTCACT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MKNIHSHRKDEHISLAEKFYSPTASAGFDTIRLLPNALPETGISEVSLETTLAGLKMPLPFFIQAMTGGSAYTAKLNARL
AKIAQETDLAMAVGSQSVALKYPELADTFKIVRETNPQGLIMANVGADASVAKAQAAVDMLQANALQLHINVAQELVMPE
GDRTFDYLDHIAEIVSNLKVPVIVKAVGAGMTHQDALALKKVGVKFIDVGGRGGTNFIQIENARRHTKDFDFMTSFGLTT
VESLKSITVDGLSITATGGIRNSSDIIKSLALGADNVGIAGYFLHQLLHHDDAFMVEMIEQMKYQLKSLLVLLGVKSINE
LSEKNLF

Sequences:

>Translated_327_residues
MKNIHSHRKDEHISLAEKFYSPTASAGFDTIRLLPNALPETGISEVSLETTLAGLKMPLPFFIQAMTGGSAYTAKLNARL
AKIAQETDLAMAVGSQSVALKYPELADTFKIVRETNPQGLIMANVGADASVAKAQAAVDMLQANALQLHINVAQELVMPE
GDRTFDYLDHIAEIVSNLKVPVIVKAVGAGMTHQDALALKKVGVKFIDVGGRGGTNFIQIENARRHTKDFDFMTSFGLTT
VESLKSITVDGLSITATGGIRNSSDIIKSLALGADNVGIAGYFLHQLLHHDDAFMVEMIEQMKYQLKSLLVLLGVKSINE
LSEKNLF
>Mature_327_residues
MKNIHSHRKDEHISLAEKFYSPTASAGFDTIRLLPNALPETGISEVSLETTLAGLKMPLPFFIQAMTGGSAYTAKLNARL
AKIAQETDLAMAVGSQSVALKYPELADTFKIVRETNPQGLIMANVGADASVAKAQAAVDMLQANALQLHINVAQELVMPE
GDRTFDYLDHIAEIVSNLKVPVIVKAVGAGMTHQDALALKKVGVKFIDVGGRGGTNFIQIENARRHTKDFDFMTSFGLTT
VESLKSITVDGLSITATGGIRNSSDIIKSLALGADNVGIAGYFLHQLLHHDDAFMVEMIEQMKYQLKSLLVLLGVKSINE
LSEKNLF

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 35353; Mature: 35353

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIHSHRKDEHISLAEKFYSPTASAGFDTIRLLPNALPETGISEVSLETTLAGLKMPLP
CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH
FFIQAMTGGSAYTAKLNARLAKIAQETDLAMAVGSQSVALKYPELADTFKIVRETNPQGL
HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCEE
IMANVGADASVAKAQAAVDMLQANALQLHINVAQELVMPEGDRTFDYLDHIAEIVSNLKV
EEEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
PVIVKAVGAGMTHQDALALKKVGVKFIDVGGRGGTNFIQIENARRHTKDFDFMTSFGLTT
CEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCEEEECCCHHCCCCHHHHHHCCHHH
VESLKSITVDGLSITATGGIRNSSDIIKSLALGADNVGIAGYFLHQLLHHDDAFMVEMIE
HHHHHHEEECCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
QMKYQLKSLLVLLGVKSINELSEKNLF
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNIHSHRKDEHISLAEKFYSPTASAGFDTIRLLPNALPETGISEVSLETTLAGLKMPLP
CCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH
FFIQAMTGGSAYTAKLNARLAKIAQETDLAMAVGSQSVALKYPELADTFKIVRETNPQGL
HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCEE
IMANVGADASVAKAQAAVDMLQANALQLHINVAQELVMPEGDRTFDYLDHIAEIVSNLKV
EEEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
PVIVKAVGAGMTHQDALALKKVGVKFIDVGGRGGTNFIQIENARRHTKDFDFMTSFGLTT
CEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCEEEECCCHHCCCCHHHHHHCCHHH
VESLKSITVDGLSITATGGIRNSSDIIKSLALGADNVGIAGYFLHQLLHHDDAFMVEMIE
HHHHHHEEECCEEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
QMKYQLKSLLVLLGVKSINELSEKNLF
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA