Click here to switch to the map view.

The map label for this gene is ybiR [C]

Identifier: 116492677

GI number: 116492677

Start: 910836

End: 911897

Strand: Reverse

Name: ybiR [C]

Synonym: PEPE_0912

Alternate gene names: 116492677

Gene position: 911897-910836 (Counterclockwise)

Preceding gene: 116492678

Following gene: 116492675

Centisome position: 49.77

GC content: 36.82

Gene sequence:

>1062_bases
ATGTGGATTGCCTTGGGCGTATTTTTAGTTAGTTGTCTGCTAAGCCCTTTACAGTTAGGTGACATTAATTGGAAAACCAT
TTTTGCTCTATTTGCTTTAATGGTGGTGGTTAAATGCTATGAAGAACTCCATTTATTAAGTTTTGCCGCTAGTGTATTAA
TTCAAAAAGCCACCAACACTCGCCAAATTGTAGGGATGTTGGTTTTACTATCTTTTTTCAGTGCCATGTTGTTAACCAAC
GATGTCGCGATTATTACCTTACTACCACTTTTATTTATTATCAGCGAAAAAGCACACCTAAAATTGGTTATCCCTACTAT
TTTAATTACCATGGCAGCTAATTTAGGAAGTATGTTGACTCCTATGGGTAATCCGCAAAATCTCTTTATTCTAAACTACT
ATCATTTGAGCATTATCCAGATGTTGACAATGGCTCTAGCAATCAGTTTAACCAGTCTTTTATTTTTAGCTAGTTGCTTG
CTTTTAGTCCCTAAAACCCCACTTCATGGTGTGACTATTAACGTTCCTGCAATTAATCTTAAACAAACCATCATTGCTGG
GTTGGTTACCGTGATCGTCTTGTTAGGAGTCTTCTCCATCTTGCCTCTTGAGGTTATGCTCATTAGTGCAATTGGTTTAG
GACTGTTAATTAATCATAACGTGTTCGATAAAGTAGATTATGGCTTATTAATCACCTTCCTGTTCTTTTTTATGGCAGCG
GGTAATCTAAGCCGCTATCCGATTCTTACACAGACCCTGCATCAATTACTACAATCCAGTACTTCAATCTATCTTAGTTC
AATTTTTAGTAGTCAAATTATTAGTAACGTACCTGCCACCATTCTCCTTTCCAAGTTCACTAATGACGTTTATCCTCTCT
TTTTGGGCGTTAATATTGGTGGATTAGGAACTCTAGTGGCTTCACTAGCTAATTTGTTAGCCTACAAACAATTCCGTATT
CGTCACTCAGAGCCTTTCATGTTACGTTTTTCAATTTTAAATTTGGTCGGTTTGGTACTTTTAGGCCTAGTCGGTCGGGT
ATTAATTGTCTTTTTTGGATAA

Upstream 100 bases:

>100_bases
GGCGCTTTTTATGTTTTTAAATTAAATCTGATTAAAATTACATTACCTCGATGAACTGGAGTTGGACATTATTATAAATA
AACTTGTGCATGACAAAATC

Downstream 100 bases:

>100_bases
ATAAAAAACCTCAAAATTTATAAATTTTGAGGTTTTATTTTACTTTTTTTGATGTCTACCAATGCTAGTTGGACGTTTTT
GACGTCGTTTTTTCCAAATA

Product: di- and tricarboxylate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MWIALGVFLVSCLLSPLQLGDINWKTIFALFALMVVVKCYEELHLLSFAASVLIQKATNTRQIVGMLVLLSFFSAMLLTN
DVAIITLLPLLFIISEKAHLKLVIPTILITMAANLGSMLTPMGNPQNLFILNYYHLSIIQMLTMALAISLTSLLFLASCL
LLVPKTPLHGVTINVPAINLKQTIIAGLVTVIVLLGVFSILPLEVMLISAIGLGLLINHNVFDKVDYGLLITFLFFFMAA
GNLSRYPILTQTLHQLLQSSTSIYLSSIFSSQIISNVPATILLSKFTNDVYPLFLGVNIGGLGTLVASLANLLAYKQFRI
RHSEPFMLRFSILNLVGLVLLGLVGRVLIVFFG

Sequences:

>Translated_353_residues
MWIALGVFLVSCLLSPLQLGDINWKTIFALFALMVVVKCYEELHLLSFAASVLIQKATNTRQIVGMLVLLSFFSAMLLTN
DVAIITLLPLLFIISEKAHLKLVIPTILITMAANLGSMLTPMGNPQNLFILNYYHLSIIQMLTMALAISLTSLLFLASCL
LLVPKTPLHGVTINVPAINLKQTIIAGLVTVIVLLGVFSILPLEVMLISAIGLGLLINHNVFDKVDYGLLITFLFFFMAA
GNLSRYPILTQTLHQLLQSSTSIYLSSIFSSQIISNVPATILLSKFTNDVYPLFLGVNIGGLGTLVASLANLLAYKQFRI
RHSEPFMLRFSILNLVGLVLLGLVGRVLIVFFG
>Mature_353_residues
MWIALGVFLVSCLLSPLQLGDINWKTIFALFALMVVVKCYEELHLLSFAASVLIQKATNTRQIVGMLVLLSFFSAMLLTN
DVAIITLLPLLFIISEKAHLKLVIPTILITMAANLGSMLTPMGNPQNLFILNYYHLSIIQMLTMALAISLTSLLFLASCL
LLVPKTPLHGVTINVPAINLKQTIIAGLVTVIVLLGVFSILPLEVMLISAIGLGLLINHNVFDKVDYGLLITFLFFFMAA
GNLSRYPILTQTLHQLLQSSTSIYLSSIFSSQIISNVPATILLSKFTNDVYPLFLGVNIGGLGTLVASLANLLAYKQFRI
RHSEPFMLRFSILNLVGLVLLGLVGRVLIVFFG

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=335, Percent_Identity=30.7462686567164, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 38663; Mature: 38663

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIALGVFLVSCLLSPLQLGDINWKTIFALFALMVVVKCYEELHLLSFAASVLIQKATNT
CHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RQIVGMLVLLSFFSAMLLTNDVAIITLLPLLFIISEKAHLKLVIPTILITMAANLGSMLT
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHC
PMGNPQNLFILNYYHLSIIQMLTMALAISLTSLLFLASCLLLVPKTPLHGVTINVPAINL
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCH
KQTIIAGLVTVIVLLGVFSILPLEVMLISAIGLGLLINHNVFDKVDYGLLITFLFFFMAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
GNLSRYPILTQTLHQLLQSSTSIYLSSIFSSQIISNVPATILLSKFTNDVYPLFLGVNIG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHEEECCCC
GLGTLVASLANLLAYKQFRIRHSEPFMLRFSILNLVGLVLLGLVGRVLIVFFG
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWIALGVFLVSCLLSPLQLGDINWKTIFALFALMVVVKCYEELHLLSFAASVLIQKATNT
CHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RQIVGMLVLLSFFSAMLLTNDVAIITLLPLLFIISEKAHLKLVIPTILITMAANLGSMLT
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHC
PMGNPQNLFILNYYHLSIIQMLTMALAISLTSLLFLASCLLLVPKTPLHGVTINVPAINL
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCH
KQTIIAGLVTVIVLLGVFSILPLEVMLISAIGLGLLINHNVFDKVDYGLLITFLFFFMAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
GNLSRYPILTQTLHQLLQSSTSIYLSSIFSSQIISNVPATILLSKFTNDVYPLFLGVNIG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHEEECCCC
GLGTLVASLANLLAYKQFRIRHSEPFMLRFSILNLVGLVLLGLVGRVLIVFFG
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]