| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is lepA [H]
Identifier: 116492675
GI number: 116492675
Start: 908120
End: 909961
Strand: Reverse
Name: lepA [H]
Synonym: PEPE_0910
Alternate gene names: 116492675
Gene position: 909961-908120 (Counterclockwise)
Preceding gene: 116492677
Following gene: 116492673
Centisome position: 49.66
GC content: 41.1
Gene sequence:
>1842_bases ATGAACGAATATAAAGATTTACAAGATCGTCAAGCCCACATTCGAAACTTCTCAATTGTGGCCCATATAGATCATGGAAA ATCCACGTTAGCCGACCGAATTCTTGAACTAACAGAAACGGTTGCTAAGCGCGATATGCAAAATCAATTACTGGATACCA TGGATCTTGAACGTGAACGTGGAATTACTATCAAATTAAATGCTGTTGAATTACACTATACAGCAAATGATGGTGAAAAA TATATTTTCCATTTAATCGATACCCCAGGACACGTAGACTTCTCCTATGAAGTATCTCGTAGCTTGGCCGCCTGTGAAGG CGCCGTCTTAGTGGTCGATGCAGCTCAAGGAGTGGAAGCACAAACTTTGGCTAACGTTTATCTTGCTATCGATGATGATT TGGAAATTGTACCAGTTATTAATAAAATTGACTTACCTGCTGCAGATCCTGAACGGGTTAAAAATGAAATCGAAAATGTA GTTGGCTTAGACGCCAGCGACGCCGTGATGGCTAGTGCCAAACAAGGCATCGGAATTCCCGAATTACTAGAACAAATCGT TGAAAAAATCCCGGCTCCAGATGGTGACCTAGATGCTCCCTTACAGGCATTAATTTTCGACTCGAAATACGATGATTATC GTGGAGTTGTTTTGAGTGTTCGTTTATTTGAAGGGATGGTTAAACCTGGCGATAAGATTAAGTTGATGAATAGCGGTTCA GTTTACGAGGTTAACGAAGTGGGTGTTAACTCTCCTGATCCTTTGAAGCGTGACTTTTTAATGGCTGGGGATGTCGGTTA CTTAACGGCCAGCATTAAGGACATCAAAGATACTCGTGTTGGTGATACAGTTACATTGGTCAAGAATCCTGCGGCGCAGC CTTTAGAAGGTTATCGTGAAATGAGTCCAATGGTTTATTCTGGTCTATATCCTACCGATAATGCTAAATATAATGACTTA CGTGAAGCACTTGAAAAACTACAACTAAATGATGCCGCCTTGGAATTTGAACCTGAATCTTCGCAAGCCTTAGGTTTTGG TTTCCGTTGCGGATTCTTAGGTCTACTTCACATGGACGTGGTTCAAGAACGATTAGAACGAGAATTCAACCTCGACTTAA TCACGACGGCACCATCAGTTACCTACCGCGTCGAAATGACGGATGGGTCTGAAAAGATTGTTGAAAATCCTTCTGAAATG CCTGATGCTTCTAGCATTAAAAATATTAAAGAGCCTTACGTAAATGCTAGTATTATGGTCCCTAATGAATATGTCGGTGC TGTAATGGAATTATCGCAATTCCGTCGGGGAATTTTCGATACAATGGATTACATCGATGAAAACCGAGTGAACGTTAAGT ATGCCCTTCCCCTTTCAGAAATTATCTTTGATTTCTTTGATAAGTTGAAGTCTAGCACTCGTGGTTATGCTTCGCTCGAT TATGAACTCGGTGAATATAAAGTTAGCGACCTGGTTAAGATTGATATCTTATTGAATGGCGAACGAGTGGATGCTTTGAG TTTCATCTCTCATCGTGACTTCGCGCAACAACGGGGTAACGAAATTACCGCTAGTCTGAAAGAAATCATCCCTCGTCGAA ACTTTGAAATTCCAGTCCAAGCTGCAATTGGAAATAAAATCATTGCTCGTACCAACATTCGAGCTTATCGTAAAGATGTT ACTTCCAAGATTCACACCGGTGATCCTGACCGTCGTGCTAAATTGCTGGATAAACAAAAGCGTGGTAAGAAACGAATGAA ATCCGTTGGTAAAGTTGAAGTTCCTCAAGAAGCCTTCATGACCGTTTTGAAGACTGATACTGAGGGAAAAGGCGGTAAAT AA
Upstream 100 bases:
>100_bases GAATTGATATATTTTTACAATATTTTTTAGCTTAGTTTAACCTTTAAGGTTTGGTCTGATATAATTTAATACAGTGACTA CTTATGAAAAGGAAATTATT
Downstream 100 bases:
>100_bases GGATTATTGAGTTTGAAAAAATGCCATAAATGTTAATTTTCCTGCGAATTTCCTGCATAACTCATTTTTTAGATGTTTTC GCAGAAAATAAATATAAAAC
Product: GTP-binding protein LepA
Products: NA
Alternate protein names: EF-4; Ribosomal back-translocase LepA [H]
Number of amino acids: Translated: 613; Mature: 613
Protein sequence:
>613_residues MNEYKDLQDRQAHIRNFSIVAHIDHGKSTLADRILELTETVAKRDMQNQLLDTMDLERERGITIKLNAVELHYTANDGEK YIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDAAQGVEAQTLANVYLAIDDDLEIVPVINKIDLPAADPERVKNEIENV VGLDASDAVMASAKQGIGIPELLEQIVEKIPAPDGDLDAPLQALIFDSKYDDYRGVVLSVRLFEGMVKPGDKIKLMNSGS VYEVNEVGVNSPDPLKRDFLMAGDVGYLTASIKDIKDTRVGDTVTLVKNPAAQPLEGYREMSPMVYSGLYPTDNAKYNDL REALEKLQLNDAALEFEPESSQALGFGFRCGFLGLLHMDVVQERLEREFNLDLITTAPSVTYRVEMTDGSEKIVENPSEM PDASSIKNIKEPYVNASIMVPNEYVGAVMELSQFRRGIFDTMDYIDENRVNVKYALPLSEIIFDFFDKLKSSTRGYASLD YELGEYKVSDLVKIDILLNGERVDALSFISHRDFAQQRGNEITASLKEIIPRRNFEIPVQAAIGNKIIARTNIRAYRKDV TSKIHTGDPDRRAKLLDKQKRGKKRMKSVGKVEVPQEAFMTVLKTDTEGKGGK
Sequences:
>Translated_613_residues MNEYKDLQDRQAHIRNFSIVAHIDHGKSTLADRILELTETVAKRDMQNQLLDTMDLERERGITIKLNAVELHYTANDGEK YIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDAAQGVEAQTLANVYLAIDDDLEIVPVINKIDLPAADPERVKNEIENV VGLDASDAVMASAKQGIGIPELLEQIVEKIPAPDGDLDAPLQALIFDSKYDDYRGVVLSVRLFEGMVKPGDKIKLMNSGS VYEVNEVGVNSPDPLKRDFLMAGDVGYLTASIKDIKDTRVGDTVTLVKNPAAQPLEGYREMSPMVYSGLYPTDNAKYNDL REALEKLQLNDAALEFEPESSQALGFGFRCGFLGLLHMDVVQERLEREFNLDLITTAPSVTYRVEMTDGSEKIVENPSEM PDASSIKNIKEPYVNASIMVPNEYVGAVMELSQFRRGIFDTMDYIDENRVNVKYALPLSEIIFDFFDKLKSSTRGYASLD YELGEYKVSDLVKIDILLNGERVDALSFISHRDFAQQRGNEITASLKEIIPRRNFEIPVQAAIGNKIIARTNIRAYRKDV TSKIHTGDPDRRAKLLDKQKRGKKRMKSVGKVEVPQEAFMTVLKTDTEGKGGK >Mature_613_residues MNEYKDLQDRQAHIRNFSIVAHIDHGKSTLADRILELTETVAKRDMQNQLLDTMDLERERGITIKLNAVELHYTANDGEK YIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDAAQGVEAQTLANVYLAIDDDLEIVPVINKIDLPAADPERVKNEIENV VGLDASDAVMASAKQGIGIPELLEQIVEKIPAPDGDLDAPLQALIFDSKYDDYRGVVLSVRLFEGMVKPGDKIKLMNSGS VYEVNEVGVNSPDPLKRDFLMAGDVGYLTASIKDIKDTRVGDTVTLVKNPAAQPLEGYREMSPMVYSGLYPTDNAKYNDL REALEKLQLNDAALEFEPESSQALGFGFRCGFLGLLHMDVVQERLEREFNLDLITTAPSVTYRVEMTDGSEKIVENPSEM PDASSIKNIKEPYVNASIMVPNEYVGAVMELSQFRRGIFDTMDYIDENRVNVKYALPLSEIIFDFFDKLKSSTRGYASLD YELGEYKVSDLVKIDILLNGERVDALSFISHRDFAQQRGNEITASLKEIIPRRNFEIPVQAAIGNKIIARTNIRAYRKDV TSKIHTGDPDRRAKLLDKQKRGKKRMKSVGKVEVPQEAFMTVLKTDTEGKGGK
Specific function: Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- transloc
COG id: COG0481
COG function: function code M; Membrane GTPase LepA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. LepA subfamily [H]
Homologues:
Organism=Homo sapiens, GI157426893, Length=603, Percent_Identity=49.5854063018242, Blast_Score=619, Evalue=1e-177, Organism=Homo sapiens, GI94966754, Length=140, Percent_Identity=45.7142857142857, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI4503483, Length=156, Percent_Identity=38.4615384615385, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI18390331, Length=180, Percent_Identity=35.5555555555556, Blast_Score=102, Evalue=7e-22, Organism=Homo sapiens, GI310132016, Length=117, Percent_Identity=42.7350427350427, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI310110807, Length=117, Percent_Identity=42.7350427350427, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI310123363, Length=117, Percent_Identity=42.7350427350427, Blast_Score=100, Evalue=6e-21, Organism=Homo sapiens, GI217272894, Length=180, Percent_Identity=32.2222222222222, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI217272892, Length=180, Percent_Identity=32.2222222222222, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI25306283, Length=136, Percent_Identity=45.5882352941176, Blast_Score=97, Evalue=6e-20, Organism=Homo sapiens, GI19923640, Length=136, Percent_Identity=45.5882352941176, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI25306287, Length=136, Percent_Identity=45.5882352941176, Blast_Score=96, Evalue=7e-20, Organism=Homo sapiens, GI53729339, Length=228, Percent_Identity=30.2631578947368, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI53729337, Length=228, Percent_Identity=30.2631578947368, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI94966752, Length=78, Percent_Identity=46.1538461538462, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI34147630, Length=243, Percent_Identity=28.8065843621399, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1788922, Length=598, Percent_Identity=55.1839464882943, Blast_Score=679, Evalue=0.0, Organism=Escherichia coli, GI48994988, Length=503, Percent_Identity=31.013916500994, Blast_Score=181, Evalue=1e-46, Organism=Escherichia coli, GI1790835, Length=155, Percent_Identity=31.6129032258064, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1789738, Length=158, Percent_Identity=36.0759493670886, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1789559, Length=254, Percent_Identity=31.8897637795276, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1790412, Length=275, Percent_Identity=26.1818181818182, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1789737, Length=275, Percent_Identity=26.1818181818182, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17557151, Length=611, Percent_Identity=41.7348608837971, Blast_Score=483, Evalue=1e-136, Organism=Caenorhabditis elegans, GI17506493, Length=168, Percent_Identity=36.3095238095238, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17556745, Length=162, Percent_Identity=37.037037037037, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17533571, Length=159, Percent_Identity=35.8490566037736, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71988811, Length=200, Percent_Identity=32, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71988819, Length=134, Percent_Identity=38.8059701492537, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17552882, Length=153, Percent_Identity=35.2941176470588, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994658, Length=235, Percent_Identity=29.7872340425532, Blast_Score=73, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17556456, Length=247, Percent_Identity=29.1497975708502, Blast_Score=68, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25141371, Length=285, Percent_Identity=27.0175438596491, Blast_Score=67, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323320, Length=598, Percent_Identity=45.6521739130435, Blast_Score=531, Evalue=1e-151, Organism=Saccharomyces cerevisiae, GI6323098, Length=204, Percent_Identity=35.7843137254902, Blast_Score=111, Evalue=3e-25, Organism=Saccharomyces cerevisiae, GI6324707, Length=156, Percent_Identity=37.8205128205128, Blast_Score=110, Evalue=7e-25, Organism=Saccharomyces cerevisiae, GI6320593, Length=156, Percent_Identity=37.8205128205128, Blast_Score=110, Evalue=7e-25, Organism=Saccharomyces cerevisiae, GI6322359, Length=151, Percent_Identity=35.0993377483444, Blast_Score=91, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6324166, Length=151, Percent_Identity=37.7483443708609, Blast_Score=89, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6324761, Length=263, Percent_Identity=30.7984790874525, Blast_Score=88, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6322675, Length=139, Percent_Identity=28.7769784172662, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI78706572, Length=599, Percent_Identity=45.0751252086811, Blast_Score=528, Evalue=1e-150, Organism=Drosophila melanogaster, GI28574573, Length=238, Percent_Identity=35.7142857142857, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI24582462, Length=159, Percent_Identity=38.3647798742138, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI24585709, Length=160, Percent_Identity=34.375, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI24585711, Length=152, Percent_Identity=34.8684210526316, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI24585713, Length=152, Percent_Identity=34.8684210526316, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI21357743, Length=175, Percent_Identity=36, Blast_Score=93, Evalue=7e-19, Organism=Drosophila melanogaster, GI221458488, Length=151, Percent_Identity=39.7350993377483, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI281363316, Length=298, Percent_Identity=28.8590604026846, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI17864358, Length=298, Percent_Identity=28.8590604026846, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI28572034, Length=222, Percent_Identity=29.2792792792793, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI19921738, Length=233, Percent_Identity=30.0429184549356, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR006297 - InterPro: IPR013842 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF06421 LepA_C [H]
EC number: NA
Molecular weight: Translated: 68498; Mature: 68498
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEYKDLQDRQAHIRNFSIVAHIDHGKSTLADRILELTETVAKRDMQNQLLDTMDLERER CCCCHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GITIKLNAVELHYTANDGEKYIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDAAQGVEA CEEEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEHHHHHHHHHCCCCEEEEECCCCCCH QTLANVYLAIDDDLEIVPVINKIDLPAADPERVKNEIENVVGLDASDAVMASAKQGIGIP HEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHH ELLEQIVEKIPAPDGDLDAPLQALIFDSKYDDYRGVVLSVRLFEGMVKPGDKIKLMNSGS HHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCCCEEEEEHHHHHCCCCCEEEEECCCC VYEVNEVGVNSPDPLKRDFLMAGDVGYLTASIKDIKDTRVGDTVTLVKNPAAQPLEGYRE EEEEHCCCCCCCCCCCHHEEEECCCHHEEHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH MSPMVYSGLYPTDNAKYNDLREALEKLQLNDAALEFEPESSQALGFGFRCGFLGLLHMDV CCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH VQERLEREFNLDLITTAPSVTYRVEMTDGSEKIVENPSEMPDASSIKNIKEPYVNASIMV HHHHHHHHCCCEEEECCCCEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHCCCCCEEEC PNEYVGAVMELSQFRRGIFDTMDYIDENRVNVKYALPLSEIIFDFFDKLKSSTRGYASLD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEC YELGEYKVSDLVKIDILLNGERVDALSFISHRDFAQQRGNEITASLKEIIPRRNFEIPVQ CCCCCEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEE AAIGNKIIARTNIRAYRKDVTSKIHTGDPDRRAKLLDKQKRGKKRMKSVGKVEVPQEAFM HHCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH TVLKTDTEGKGGK HHHHCCCCCCCCC >Mature Secondary Structure MNEYKDLQDRQAHIRNFSIVAHIDHGKSTLADRILELTETVAKRDMQNQLLDTMDLERER CCCCHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GITIKLNAVELHYTANDGEKYIFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDAAQGVEA CEEEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEHHHHHHHHHCCCCEEEEECCCCCCH QTLANVYLAIDDDLEIVPVINKIDLPAADPERVKNEIENVVGLDASDAVMASAKQGIGIP HEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHH ELLEQIVEKIPAPDGDLDAPLQALIFDSKYDDYRGVVLSVRLFEGMVKPGDKIKLMNSGS HHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCCCEEEEEHHHHHCCCCCEEEEECCCC VYEVNEVGVNSPDPLKRDFLMAGDVGYLTASIKDIKDTRVGDTVTLVKNPAAQPLEGYRE EEEEHCCCCCCCCCCCHHEEEECCCHHEEHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH MSPMVYSGLYPTDNAKYNDLREALEKLQLNDAALEFEPESSQALGFGFRCGFLGLLHMDV CCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH VQERLEREFNLDLITTAPSVTYRVEMTDGSEKIVENPSEMPDASSIKNIKEPYVNASIMV HHHHHHHHCCCEEEECCCCEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHCCCCCEEEC PNEYVGAVMELSQFRRGIFDTMDYIDENRVNVKYALPLSEIIFDFFDKLKSSTRGYASLD CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEC YELGEYKVSDLVKIDILLNGERVDALSFISHRDFAQQRGNEITASLKEIIPRRNFEIPVQ CCCCCEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEE AAIGNKIIARTNIRAYRKDVTSKIHTGDPDRRAKLLDKQKRGKKRMKSVGKVEVPQEAFM HHCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH TVLKTDTEGKGGK HHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA