Click here to switch to the map view.

The map label for this gene is ydiB [H]

Identifier: 116492272

GI number: 116492272

Start: 522953

End: 523426

Strand: Direct

Name: ydiB [H]

Synonym: PEPE_0470

Alternate gene names: 116492272

Gene position: 522953-523426 (Clockwise)

Preceding gene: 116492271

Following gene: 116492273

Centisome position: 28.54

GC content: 39.66

Gene sequence:

>474_bases
ATGGAAACCTATCAACTAAATGACGAAGCCGAAACGATTAAATTTGGCAAAATTATCGGGGAATTACTGGAAGCTAACGA
CGTGGTCTTATTAGATGGTGATTTAGGAGCCGGAAAAACGACACTGACAAAAGGCATTGCTCAAGCACTTGGAATTCGGC
GCTACGTGAAGAGTCCCACCTATACCATTGTGCATGAGTACCATGATGGTAATATGCCATTATTTCATATCGATGCATAT
CGTCTTGAAGAAGACGGTGCGGGAGATATTGGAATTGACGAATACTTTGAAAGTGATGGAGTGACCGTGGTGGAATGGTC
ACAGTATATTAAATCGTATTTGCCAGATCAATTTTTAAGGGTTATTTTAGATCGCAATCATGACAATACCAAACGTTTTC
TAACTTTGGAGCCTAACGGTGAACATTATCAAAAAATCGAAGAAGCAATTGAGGAAAATATCAATGGCCGATGA

Upstream 100 bases:

>100_bases
GCTCAAAGCCATTTTCAAAAACCAACGAAGCGCTTGAAGCGATGGGAGAGACACCAATTGACTGGCAGTTGCCAACGGAA
GTTTTGGAGGAAAAATAATC

Downstream 100 bases:

>100_bases
AGTTAGTTTTGTTGAGGGGCAAGCTGAGGATGCACAAGGGATTGTTCAACTAATTCAAAAATTGGAATCTGAAACAACTT
CCATTGAATTTGATGATGCA

Product: ATPase or kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
METYQLNDEAETIKFGKIIGELLEANDVVLLDGDLGAGKTTLTKGIAQALGIRRYVKSPTYTIVHEYHDGNMPLFHIDAY
RLEEDGAGDIGIDEYFESDGVTVVEWSQYIKSYLPDQFLRVILDRNHDNTKRFLTLEPNGEHYQKIEEAIEENINGR

Sequences:

>Translated_157_residues
METYQLNDEAETIKFGKIIGELLEANDVVLLDGDLGAGKTTLTKGIAQALGIRRYVKSPTYTIVHEYHDGNMPLFHIDAY
RLEEDGAGDIGIDEYFESDGVTVVEWSQYIKSYLPDQFLRVILDRNHDNTKRFLTLEPNGEHYQKIEEAIEENINGR
>Mature_157_residues
METYQLNDEAETIKFGKIIGELLEANDVVLLDGDLGAGKTTLTKGIAQALGIRRYVKSPTYTIVHEYHDGNMPLFHIDAY
RLEEDGAGDIGIDEYFESDGVTVVEWSQYIKSYLPDQFLRVILDRNHDNTKRFLTLEPNGEHYQKIEEAIEENINGR

Specific function: Displays ATPase activity, which is modulated by the oligomeric status of the protein. The physiological partner is unknown [H]

COG id: COG0802

COG function: function code R; Predicted ATPase or kinase

Gene ontology:

Cell location: Cytoplasm. Note=Localized predominantly at the cell poles and at the periphery of the bacterium [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0079 family [H]

Homologues:

Organism=Escherichia coli, GI1790610, Length=120, Percent_Identity=40.8333333333333, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003442 [H]

Pfam domain/function: PF02367 UPF0079 [H]

EC number: NA

Molecular weight: Translated: 17910; Mature: 17910

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METYQLNDEAETIKFGKIIGELLEANDVVLLDGDLGAGKTTLTKGIAQALGIRRYVKSPT
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
YTIVHEYHDGNMPLFHIDAYRLEEDGAGDIGIDEYFESDGVTVVEWSQYIKSYLPDQFLR
EEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHCCHHHHH
VILDRNHDNTKRFLTLEPNGEHYQKIEEAIEENINGR
HHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
METYQLNDEAETIKFGKIIGELLEANDVVLLDGDLGAGKTTLTKGIAQALGIRRYVKSPT
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
YTIVHEYHDGNMPLFHIDAYRLEEDGAGDIGIDEYFESDGVTVVEWSQYIKSYLPDQFLR
EEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHCCHHHHH
VILDRNHDNTKRFLTLEPNGEHYQKIEEAIEENINGR
HHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]