| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is pgcA [H]
Identifier: 116492249
GI number: 116492249
Start: 495032
End: 496756
Strand: Direct
Name: pgcA [H]
Synonym: PEPE_0446
Alternate gene names: 116492249
Gene position: 495032-496756 (Clockwise)
Preceding gene: 116492248
Following gene: 116492250
Centisome position: 27.02
GC content: 38.03
Gene sequence:
>1725_bases ATGAGTTGGGAAGATTCTGTCAAAGAATGGCAAGATTATGCAGATTTAGATTTTAATTTAAAAAAAGAATTAGCAACTTT AGCTGAAGATAAAGATGCTTTAAAAGAAGCCTTTTATGCTCCAATGGAATTTGGTACAGCAGGAATGCGTGGCGTAATGG GCCCTGGTATCAACCGGATGAATATCTATACGGTTCGTCAAGCAACAGAAGGTTTAGCTAATTTTATGGATACCTTGGAT TTTACTGATAAGAAACGGGGAGTGGCGATCAGTTTTGATTCCCGCTATCACTCACAAGAGTTTGCTTTAGCAGCAGCTGG TGTTTTAGGTAAGCATGGTATTCCAAGTTTTGTTTTTGATAGTATGCGTCCCACTCCAGAATTATCATATACAGTACGTG AGTTAAACACTTATGCTGGAATCATGATTACTGCTAGTCATAATCCTAAACAATATAATGGATATAAGATTTATGGTCCT GATGGCGGACAAATGCCACCAATGGAATCTGATAAGATTACAGAATATATTCGCCAAGTAACTGACATCTTTGGTGTTGA AACTCTTACTCAAAGTGAATTAAGAGCTAAGGGCTTAATGACCATTATTGGTGAAGACATTGACCTCAAGTATCTTGAGG AAGTTAAGACGGTATCAATTAATCATGAACTAATCCAACGCTTTGGTGCAGACATGAAGTTGATCTACTCACCATTACAT GGTACTGGAAAAGTAGTTGGTGGACGTGCGTTAGAAAATGCTGGTTTTAAGGATTACACTATGGTCCCTGAACAAGCAAT TGCTGACCCAGAATTTATTACAACGCCATTCCCTAACCCAGAATTCCCACAAACTTTTGATTTGGCTATTGAATTAGGTA AAAAGCAAGATGCTGACCTTTTGATTGCCACTGATCCGGATGCCGATCGTTTGGGAGCTGCCGTTCGTTTACCAAATGGT GACTACAAATTATTGACAGGAAATCAAATTGCAGCCCTGATGTTAGAATACATCTTAACTGCGCATGATGCAGCGGGTGA CTTGCCAAGTAATGCAGCTGCCGTTAAATCAATTGTTTCTAGTGAACTAGCAACCAGAATTGCCGAAGCCCATCATGTAG AAATGATTAACGTTCTAACTGGGTTTAAGTACATTGCTGACCAAATTAAACATTACGAAGAAAATGGCGACCATACCTTT ATGTTTGGTTTCGAAGAAAGTTATGGCTATCTTGTTCGGCCATTTGTTCGCGATAAAGATGCCATCCAAGGAATTGTCCT ATTGGCTGAAATTGCTGCTTATTATCGTAGTAAGGGGCAAACCTTATATGACGGTCTTCAAAACTTATTTACTACTTACG GATATCATGAAGAAAAGACCATTTCAAAAGATTTCCCTGGAGTTGACGGTAAAGAAAAAATGGCTGCCATTATGGAAAAG GTTCGTGAAGAACGCCCAAGTCAATTTGATCAGTACAAGGTATTAGAAACTGAAGACTTCTTAGCTCAAACTAAGTATGA AGCAGACGGATCTACCCAAGCTATCAAATTACCAAAAGCGGATGTTTTGAAATTTACATTAGATGATGGTACTTGGATTG CAATTCGCCCTTCTGGAACAGAACCAAAAATTAAATTCTATATTGGTACAGTTGGCGAAGATGAAAAAGATGCTTTGAAT AAGATTGATGTTTTTGAAACAGCTATTAATGAACTTATAAAATAA
Upstream 100 bases:
>100_bases GTGATTGGTCTATACCTAAAATTAAAAAAACGCTTTCTGGTATTCCATGGGTATTGTATAATGAAAGTAACTATAAGTTA CATCATAGGAGGATTTTTGA
Downstream 100 bases:
>100_bases TATTTAAAGAACTATGACGGAGCTCAAATTGAATGGTTATGCGCGATTCAGTTGGGCTTTTGGAGCATAGTTCTTTTTTA TTCTAATTAAGTGAATCGGA
Product: alpha-phosphoglucomutase
Products: NA
Alternate protein names: PGM; Alpha-phosphoglucomutase; Glucose phosphomutase [H]
Number of amino acids: Translated: 574; Mature: 573
Protein sequence:
>574_residues MSWEDSVKEWQDYADLDFNLKKELATLAEDKDALKEAFYAPMEFGTAGMRGVMGPGINRMNIYTVRQATEGLANFMDTLD FTDKKRGVAISFDSRYHSQEFALAAAGVLGKHGIPSFVFDSMRPTPELSYTVRELNTYAGIMITASHNPKQYNGYKIYGP DGGQMPPMESDKITEYIRQVTDIFGVETLTQSELRAKGLMTIIGEDIDLKYLEEVKTVSINHELIQRFGADMKLIYSPLH GTGKVVGGRALENAGFKDYTMVPEQAIADPEFITTPFPNPEFPQTFDLAIELGKKQDADLLIATDPDADRLGAAVRLPNG DYKLLTGNQIAALMLEYILTAHDAAGDLPSNAAAVKSIVSSELATRIAEAHHVEMINVLTGFKYIADQIKHYEENGDHTF MFGFEESYGYLVRPFVRDKDAIQGIVLLAEIAAYYRSKGQTLYDGLQNLFTTYGYHEEKTISKDFPGVDGKEKMAAIMEK VREERPSQFDQYKVLETEDFLAQTKYEADGSTQAIKLPKADVLKFTLDDGTWIAIRPSGTEPKIKFYIGTVGEDEKDALN KIDVFETAINELIK
Sequences:
>Translated_574_residues MSWEDSVKEWQDYADLDFNLKKELATLAEDKDALKEAFYAPMEFGTAGMRGVMGPGINRMNIYTVRQATEGLANFMDTLD FTDKKRGVAISFDSRYHSQEFALAAAGVLGKHGIPSFVFDSMRPTPELSYTVRELNTYAGIMITASHNPKQYNGYKIYGP DGGQMPPMESDKITEYIRQVTDIFGVETLTQSELRAKGLMTIIGEDIDLKYLEEVKTVSINHELIQRFGADMKLIYSPLH GTGKVVGGRALENAGFKDYTMVPEQAIADPEFITTPFPNPEFPQTFDLAIELGKKQDADLLIATDPDADRLGAAVRLPNG DYKLLTGNQIAALMLEYILTAHDAAGDLPSNAAAVKSIVSSELATRIAEAHHVEMINVLTGFKYIADQIKHYEENGDHTF MFGFEESYGYLVRPFVRDKDAIQGIVLLAEIAAYYRSKGQTLYDGLQNLFTTYGYHEEKTISKDFPGVDGKEKMAAIMEK VREERPSQFDQYKVLETEDFLAQTKYEADGSTQAIKLPKADVLKFTLDDGTWIAIRPSGTEPKIKFYIGTVGEDEKDALN KIDVFETAINELIK >Mature_573_residues SWEDSVKEWQDYADLDFNLKKELATLAEDKDALKEAFYAPMEFGTAGMRGVMGPGINRMNIYTVRQATEGLANFMDTLDF TDKKRGVAISFDSRYHSQEFALAAAGVLGKHGIPSFVFDSMRPTPELSYTVRELNTYAGIMITASHNPKQYNGYKIYGPD GGQMPPMESDKITEYIRQVTDIFGVETLTQSELRAKGLMTIIGEDIDLKYLEEVKTVSINHELIQRFGADMKLIYSPLHG TGKVVGGRALENAGFKDYTMVPEQAIADPEFITTPFPNPEFPQTFDLAIELGKKQDADLLIATDPDADRLGAAVRLPNGD YKLLTGNQIAALMLEYILTAHDAAGDLPSNAAAVKSIVSSELATRIAEAHHVEMINVLTGFKYIADQIKHYEENGDHTFM FGFEESYGYLVRPFVRDKDAIQGIVLLAEIAAYYRSKGQTLYDGLQNLFTTYGYHEEKTISKDFPGVDGKEKMAAIMEKV REERPSQFDQYKVLETEDFLAQTKYEADGSTQAIKLPKADVLKFTLDDGTWIAIRPSGTEPKIKFYIGTVGEDEKDALNK IDVFETAINELIK
Specific function: Catalyzes the interconversion between glucose-6- phosphate and alpha-glucose-1-phosphate. This is the first step in the biosynthesis of diglucosyl-diacylglycerol (Glc2-DAG), i.e. the predominant glycolipid found in B.subtilis membrane, which is also used
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI63055049, Length=609, Percent_Identity=32.3481116584565, Blast_Score=281, Evalue=8e-76, Organism=Homo sapiens, GI31377548, Length=545, Percent_Identity=33.5779816513761, Blast_Score=266, Evalue=5e-71, Organism=Escherichia coli, GI1786904, Length=545, Percent_Identity=25.5045871559633, Blast_Score=83, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71993870, Length=582, Percent_Identity=32.3024054982818, Blast_Score=246, Evalue=2e-65, Organism=Caenorhabditis elegans, GI71993878, Length=316, Percent_Identity=36.3924050632911, Blast_Score=163, Evalue=2e-40, Organism=Saccharomyces cerevisiae, GI6323934, Length=577, Percent_Identity=32.5823223570191, Blast_Score=226, Evalue=1e-59, Organism=Drosophila melanogaster, GI20129809, Length=573, Percent_Identity=29.8429319371728, Blast_Score=258, Evalue=7e-69, Organism=Drosophila melanogaster, GI24651977, Length=442, Percent_Identity=32.579185520362, Blast_Score=234, Evalue=9e-62, Organism=Drosophila melanogaster, GI24653722, Length=560, Percent_Identity=29.2857142857143, Blast_Score=214, Evalue=9e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 64116; Mature: 63985
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWEDSVKEWQDYADLDFNLKKELATLAEDKDALKEAFYAPMEFGTAGMRGVMGPGINRM CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCE NIYTVRQATEGLANFMDTLDFTDKKRGVAISFDSRYHSQEFALAAAGVLGKHGIPSFVFD EEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHH SMRPTPELSYTVRELNTYAGIMITASHNPKQYNGYKIYGPDGGQMPPMESDKITEYIRQV CCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH TDIFGVETLTQSELRAKGLMTIIGEDIDLKYLEEVKTVSINHELIQRFGADMKLIYSPLH HHHHHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHEECCHHHHHHHCCCEEEEEECCC GTGKVVGGRALENAGFKDYTMVPEQAIADPEFITTPFPNPEFPQTFDLAIELGKKQDADL CCCCEECCCHHHCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCHHHHHEEECCCCCCCE LIATDPDADRLGAAVRLPNGDYKLLTGNQIAALMLEYILTAHDAAGDLPSNAAAVKSIVS EEEECCCHHHCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH SELATRIAEAHHVEMINVLTGFKYIADQIKHYEENGDHTFMFGFEESYGYLVRPFVRDKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECHHCCHH AIQGIVLLAEIAAYYRSKGQTLYDGLQNLFTTYGYHEEKTISKDFPGVDGKEKMAAIMEK HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH VREERPSQFDQYKVLETEDFLAQTKYEADGSTQAIKLPKADVLKFTLDDGTWIAIRPSGT HHHHCCCCCCCEEEECHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCC EPKIKFYIGTVGEDEKDALNKIDVFETAINELIK CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SWEDSVKEWQDYADLDFNLKKELATLAEDKDALKEAFYAPMEFGTAGMRGVMGPGINRM CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCE NIYTVRQATEGLANFMDTLDFTDKKRGVAISFDSRYHSQEFALAAAGVLGKHGIPSFVFD EEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHH SMRPTPELSYTVRELNTYAGIMITASHNPKQYNGYKIYGPDGGQMPPMESDKITEYIRQV CCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHH TDIFGVETLTQSELRAKGLMTIIGEDIDLKYLEEVKTVSINHELIQRFGADMKLIYSPLH HHHHHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHEECCHHHHHHHCCCEEEEEECCC GTGKVVGGRALENAGFKDYTMVPEQAIADPEFITTPFPNPEFPQTFDLAIELGKKQDADL CCCCEECCCHHHCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCHHHHHEEECCCCCCCE LIATDPDADRLGAAVRLPNGDYKLLTGNQIAALMLEYILTAHDAAGDLPSNAAAVKSIVS EEEECCCHHHCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH SELATRIAEAHHVEMINVLTGFKYIADQIKHYEENGDHTFMFGFEESYGYLVRPFVRDKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECHHCCHH AIQGIVLLAEIAAYYRSKGQTLYDGLQNLFTTYGYHEEKTISKDFPGVDGKEKMAAIMEK HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH VREERPSQFDQYKVLETEDFLAQTKYEADGSTQAIKLPKADVLKFTLDDGTWIAIRPSGT HHHHCCCCCCCEEEECHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCC EPKIKFYIGTVGEDEKDALNKIDVFETAINELIK CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 2127799 [H]