Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
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Accession | NC_008525 |
Length | 1,832,387 |
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The map label for this gene is gmk [H]
Identifier: 116492188
GI number: 116492188
Start: 432400
End: 432981
Strand: Direct
Name: gmk [H]
Synonym: PEPE_0385
Alternate gene names: 116492188
Gene position: 432400-432981 (Clockwise)
Preceding gene: 116492186
Following gene: 116492189
Centisome position: 23.6
GC content: 38.32
Gene sequence:
>582_bases ATGGATAAAGTTATTGTGATTGCTGGACCAACTGGATCGGGAAAAACGACGATTGCCGATTACCTTTACCAAAAATATGG AGTGATTAAGGTAATTACCCACACTACGAGACCAAAAAGAAAAAATGAGCAATCAGGAATCGATTATTACTTTGAAACAG ACGAGACATTTGATGATAACCATTACTTAGAACAGGTGCAGTATTCTTACTATCGATATGGTTCTTCGTATGAGGGCCTT CGACGTGCTTGGTCAAAAAATTCAATTGCTAGTATTGTATTAGACACAGCTGGAGCAATAACTTACCTTAAAGAGTTAGG GGCACAGGTGGAAATCTTATTTTTACGGGTAAACGAAGAAAAAACTTTGAAGGATCGATTGTTAAAACGTGGTGATAGCT TAGAGGCAATCCAAAAAAGAATTGACAGTCCCGAATATCGACGCGACATGCAGTTGCCAGAAGAGCTTCAAGGGCGGGCG ACGGTCATTAATAACGATGATTGGGAGCACACCAAACAAAAAATTGATCAATTTTATCAAAGAGTTAAAGAAGCAACCAA AAAGATACCAAATGAAGGTTAA
Upstream 100 bases:
>100_bases GTATTTTAGAAAGCTTTGAAAAGCGCTTTCATTTGTTAGGATACTTTAATTTACAATATTTTTGGAAAAAATGCAACTAT TTTGAATTGAGGAGTTAAAA
Downstream 100 bases:
>100_bases TTATGGTAGGGTAAAACGTAATGATTACTATTTAGAGGTGCAGATTTTTGAACAAAACTAGTAAAGAAATTGCGGTAAAA ATTTTAAAAGCTAATAACTA
Product: guanylate kinase
Products: NA
Alternate protein names: GMP kinase [H]
Number of amino acids: Translated: 193; Mature: 193
Protein sequence:
>193_residues MDKVIVIAGPTGSGKTTIADYLYQKYGVIKVITHTTRPKRKNEQSGIDYYFETDETFDDNHYLEQVQYSYYRYGSSYEGL RRAWSKNSIASIVLDTAGAITYLKELGAQVEILFLRVNEEKTLKDRLLKRGDSLEAIQKRIDSPEYRRDMQLPEELQGRA TVINNDDWEHTKQKIDQFYQRVKEATKKIPNEG
Sequences:
>Translated_193_residues MDKVIVIAGPTGSGKTTIADYLYQKYGVIKVITHTTRPKRKNEQSGIDYYFETDETFDDNHYLEQVQYSYYRYGSSYEGL RRAWSKNSIASIVLDTAGAITYLKELGAQVEILFLRVNEEKTLKDRLLKRGDSLEAIQKRIDSPEYRRDMQLPEELQGRA TVINNDDWEHTKQKIDQFYQRVKEATKKIPNEG >Mature_193_residues MDKVIVIAGPTGSGKTTIADYLYQKYGVIKVITHTTRPKRKNEQSGIDYYFETDETFDDNHYLEQVQYSYYRYGSSYEGL RRAWSKNSIASIVLDTAGAITYLKELGAQVEILFLRVNEEKTLKDRLLKRGDSLEAIQKRIDSPEYRRDMQLPEELQGRA TVINNDDWEHTKQKIDQFYQRVKEATKKIPNEG
Specific function: Essential for recycling GMP and indirectly, cGMP [H]
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain [H]
Homologues:
Organism=Homo sapiens, GI226874831, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI226874833, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI4504221, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320662, Length=187, Percent_Identity=28.3422459893048, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI21356141, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 [H]
Pfam domain/function: PF00625 Guanylate_kin [H]
EC number: =2.7.4.8 [H]
Molecular weight: Translated: 22473; Mature: 22473
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKVIVIAGPTGSGKTTIADYLYQKYGVIKVITHTTRPKRKNEQSGIDYYFETDETFDDN CCCEEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCH HYLEQVQYSYYRYGSSYEGLRRAWSKNSIASIVLDTAGAITYLKELGAQVEILFLRVNEE HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC KTLKDRLLKRGDSLEAIQKRIDSPEYRRDMQLPEELQGRATVINNDDWEHTKQKIDQFYQ HHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCHHHCCCEEEECCCCHHHHHHHHHHHHH RVKEATKKIPNEG HHHHHHHCCCCCC >Mature Secondary Structure MDKVIVIAGPTGSGKTTIADYLYQKYGVIKVITHTTRPKRKNEQSGIDYYFETDETFDDN CCCEEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCH HYLEQVQYSYYRYGSSYEGLRRAWSKNSIASIVLDTAGAITYLKELGAQVEILFLRVNEE HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC KTLKDRLLKRGDSLEAIQKRIDSPEYRRDMQLPEELQGRATVINNDDWEHTKQKIDQFYQ HHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCHHHCCCEEEECCCCHHHHHHHHHHHHH RVKEATKKIPNEG HHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12663928 [H]