| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
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The map label for this gene is rbpF [H]
Identifier: 116328465
GI number: 116328465
Start: 2105367
End: 2105642
Strand: Direct
Name: rbpF [H]
Synonym: LBL_1809
Alternate gene names: 116328465
Gene position: 2105367-2105642 (Clockwise)
Preceding gene: 116328463
Following gene: 116328466
Centisome position: 58.25
GC content: 41.67
Gene sequence:
>276_bases ATGAACATTTATATAGGCAATCTCGCCTATCAGGCAACCGAAGACGATCTCCGCAAAGCATTCGAATCCTTTGGAGAAGT AACCTCAGTACGCATCATTACTGATAAACTTTCTGGCAAATCCCGGGGATTAGCATTTGTGGAAATGGCGAATAAAGAAG AAGGCAATGCAGCAATTGACGGCTTAAACGGAACCCAAATCCGTGGAAGAGAAATTAAAGTCAACGAAGCTCTTCCTAAA AAACCTTTTCCGGAAAAATCCAGATCCAGATATTGA
Upstream 100 bases:
>100_bases GGAAAGGTCATTTCTCTTTTGAATCCCGCTGATTGATTGGTCTCGCCCTGCATTCTATTCGGATTTAGAAGCCAGTAATT TTTTGTAAGGACCCTTTCTC
Downstream 100 bases:
>100_bases TTTTTTCGAAGGGGGAAAGGCGTTTGTTTTTCTCCCTTTGAAACGGCTATATCGTATCGTACTCGGGATAGAATTTTTTC TTTTTAAAATTCGGGCTCTT
Product: RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 91; Mature: 91
Protein sequence:
>91_residues MNIYIGNLAYQATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKEEGNAAIDGLNGTQIRGREIKVNEALPK KPFPEKSRSRY
Sequences:
>Translated_91_residues MNIYIGNLAYQATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKEEGNAAIDGLNGTQIRGREIKVNEALPK KPFPEKSRSRY >Mature_91_residues MNIYIGNLAYQATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKEEGNAAIDGLNGTQIRGREIKVNEALPK KPFPEKSRSRY
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI188219593, Length=86, Percent_Identity=33.7209302325581, Blast_Score=69, Evalue=1e-12, Organism=Homo sapiens, GI188219591, Length=86, Percent_Identity=33.7209302325581, Blast_Score=69, Evalue=1e-12, Organism=Homo sapiens, GI4507499, Length=87, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-12, Organism=Homo sapiens, GI77695912, Length=87, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=1e-12, Organism=Homo sapiens, GI35493811, Length=74, Percent_Identity=37.8378378378378, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI4757926, Length=74, Percent_Identity=37.8378378378378, Blast_Score=66, Evalue=5e-12, Organism=Homo sapiens, GI14149675, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI47271443, Length=81, Percent_Identity=35.8024691358025, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI45439316, Length=79, Percent_Identity=40.5063291139241, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI4557493, Length=80, Percent_Identity=35, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI5174637, Length=79, Percent_Identity=40.5063291139241, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI303305009, Length=77, Percent_Identity=41.5584415584416, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17508587, Length=77, Percent_Identity=41.5584415584416, Blast_Score=72, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=37.6623376623377, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=38.961038961039, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17532819, Length=84, Percent_Identity=36.9047619047619, Blast_Score=65, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17532817, Length=84, Percent_Identity=36.9047619047619, Blast_Score=65, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=32.8947368421053, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI32564506, Length=91, Percent_Identity=32.967032967033, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI32564504, Length=91, Percent_Identity=32.967032967033, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17531965, Length=91, Percent_Identity=32.967032967033, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17531963, Length=91, Percent_Identity=32.967032967033, Blast_Score=61, Evalue=9e-11, Organism=Drosophila melanogaster, GI24582417, Length=74, Percent_Identity=37.8378378378378, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI45550943, Length=74, Percent_Identity=37.8378378378378, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582419, Length=74, Percent_Identity=37.8378378378378, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582423, Length=74, Percent_Identity=37.8378378378378, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582421, Length=74, Percent_Identity=37.8378378378378, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI17137710, Length=80, Percent_Identity=36.25, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24649519, Length=85, Percent_Identity=37.6470588235294, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24649515, Length=85, Percent_Identity=37.6470588235294, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24649517, Length=85, Percent_Identity=37.6470588235294, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24649513, Length=85, Percent_Identity=37.6470588235294, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI17647301, Length=77, Percent_Identity=41.5584415584416, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI161078702, Length=81, Percent_Identity=35.8024691358025, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI281362714, Length=81, Percent_Identity=35.8024691358025, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI19920866, Length=74, Percent_Identity=37.8378378378378, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582412, Length=74, Percent_Identity=37.8378378378378, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI221330652, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI62471589, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI19549692, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI19549690, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI221330653, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI19549688, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI19549694, Length=78, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24650782, Length=81, Percent_Identity=35.8024691358025, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI21358099, Length=77, Percent_Identity=36.3636363636364, Blast_Score=63, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 10152; Mature: 10152
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIYIGNLAYQATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKEEGNAAID CEEEECCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEE GLNGTQIRGREIKVNEALPKKPFPEKSRSRY CCCCCEECCCEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MNIYIGNLAYQATEDDLRKAFESFGEVTSVRIITDKLSGKSRGLAFVEMANKEEGNAAID CEEEECCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEE GLNGTQIRGREIKVNEALPKKPFPEKSRSRY CCCCCEECCCEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]