Click here to switch to the map view.

The map label for this gene is rfbB [C]

Identifier: 116327930

GI number: 116327930

Start: 1431549

End: 1432394

Strand: Direct

Name: rfbB [C]

Synonym: LBL_1216

Alternate gene names: 116327930

Gene position: 1431549-1432394 (Clockwise)

Preceding gene: 116327929

Following gene: 116327931

Centisome position: 39.61

GC content: 40.78

Gene sequence:

>846_bases
ATGATTGATGTACTGGTTTCCGGCGCCTCCGGATTTATCGGTAAACCTTTGATCGAAAAATTTCGAAATCAAGGTTTATC
CGTTTTAGCGCTCGATCGAAAGATGGGGGACGTGAGCGATCCTTTGACTTGGTCAAAATTACCTGAAACAAAATCCGTCA
TTCATTTGGCGGGTCAAACTTATGTGCCCGACAGTTGGAAAGACAGTCGTTCGTTTATCAATTCCAACGTAATGGGTACA
CAAAATGCGCTGGATTACGCCCTCAAGTACGATGCGCAATTCGTATTTATCAGCGCCTATTTGTATGGGAAACCCGAAAA
ACTTCCAATTTCCGAAACTCATAGAATCGCGCCGAATAATCCATATGCTTTGTCTAAACATCTGGCGGAACAGGTCTGCG
AATTTTATTCTAAATTTAAAAATATGAATATTATTGTTTTAAGATTATTTAATGTTTACGGCCCGGGGCAAAGGGGGGAT
TTTTTGATCCCGACAATTCTTAAACAGGTTAAAACCAAGAAGGAAATTCGCGTTTTGGATCTATCACCCAAAAGGGATTA
TATTTATTTGGAGGACATCTTGAACTCGATTTCCTCCGCTTTATTTCCCATTACCGGTTTCCACACGTTCAACATCGGTT
CCGGTGTTTCTTATTCCGTGGAAGAAGTGATTTCCATCGCTCAAGAAATCGCTCATACGAGTTTGCCGGTTTTATCGGAA
TGCAAAGAAAGAAAGGAGGAAATTTTTGACGTCGTAGCCAATATTTCCAAAGCAAAAGAAGTGTTAGGATGGGAACCGAT
TTGGTCATTTCGAAACGGGTTGGCCGAAATATTAAAAGTTCTCTGA

Upstream 100 bases:

>100_bases
TCAGTTCGACCGCATGAGGGCTATTGGTTAGACATTGGACGCCCAGACGATTATGAGAAAGCGATCGATGAATTTGAAAT
AATGAAAGATACCTTATTTC

Downstream 100 bases:

>100_bases
TTTTTAAACGAAACGTTTTTAAATGAAATCGATTGAATAAGGAAATCTGAGTCGTATCGTGTTATCCCCAAAAAAAATAT
TAGTTTTAGGCGTATCCGGA

Product: glucose galactose epimerase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MIDVLVSGASGFIGKPLIEKFRNQGLSVLALDRKMGDVSDPLTWSKLPETKSVIHLAGQTYVPDSWKDSRSFINSNVMGT
QNALDYALKYDAQFVFISAYLYGKPEKLPISETHRIAPNNPYALSKHLAEQVCEFYSKFKNMNIIVLRLFNVYGPGQRGD
FLIPTILKQVKTKKEIRVLDLSPKRDYIYLEDILNSISSALFPITGFHTFNIGSGVSYSVEEVISIAQEIAHTSLPVLSE
CKERKEEIFDVVANISKAKEVLGWEPIWSFRNGLAEILKVL

Sequences:

>Translated_281_residues
MIDVLVSGASGFIGKPLIEKFRNQGLSVLALDRKMGDVSDPLTWSKLPETKSVIHLAGQTYVPDSWKDSRSFINSNVMGT
QNALDYALKYDAQFVFISAYLYGKPEKLPISETHRIAPNNPYALSKHLAEQVCEFYSKFKNMNIIVLRLFNVYGPGQRGD
FLIPTILKQVKTKKEIRVLDLSPKRDYIYLEDILNSISSALFPITGFHTFNIGSGVSYSVEEVISIAQEIAHTSLPVLSE
CKERKEEIFDVVANISKAKEVLGWEPIWSFRNGLAEILKVL
>Mature_281_residues
MIDVLVSGASGFIGKPLIEKFRNQGLSVLALDRKMGDVSDPLTWSKLPETKSVIHLAGQTYVPDSWKDSRSFINSNVMGT
QNALDYALKYDAQFVFISAYLYGKPEKLPISETHRIAPNNPYALSKHLAEQVCEFYSKFKNMNIIVLRLFNVYGPGQRGD
FLIPTILKQVKTKKEIRVLDLSPKRDYIYLEDILNSISSALFPITGFHTFNIGSGVSYSVEEVISIAQEIAHTSLPVLSE
CKERKEEIFDVVANISKAKEVLGWEPIWSFRNGLAEILKVL

Specific function: DTDP-L-RHAMNOSE BIOSYNTHESIS WITHIN THE O ANTIGEN BIOSYNTHESIS PATHWAY OF LIPOPOLYSACCHARIDE BIOSYNTHESIS. [C]

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI42516563, Length=302, Percent_Identity=25.8278145695364, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI56237023, Length=317, Percent_Identity=25.2365930599369, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI56118217, Length=317, Percent_Identity=25.2365930599369, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI189083684, Length=317, Percent_Identity=25.2365930599369, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7657641, Length=258, Percent_Identity=25.5813953488372, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788353, Length=335, Percent_Identity=23.5820895522388, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786974, Length=313, Percent_Identity=25.2396166134185, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71982035, Length=324, Percent_Identity=27.1604938271605, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71982038, Length=326, Percent_Identity=26.6871165644172, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17539532, Length=301, Percent_Identity=23.5880398671096, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17568069, Length=317, Percent_Identity=25.5520504731861, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115532424, Length=240, Percent_Identity=24.1666666666667, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6319493, Length=320, Percent_Identity=24.375, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356223, Length=304, Percent_Identity=24.0131578947368, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 31623; Mature: 31623

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVLVSGASGFIGKPLIEKFRNQGLSVLALDRKMGDVSDPLTWSKLPETKSVIHLAGQT
CCEEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCHHCCCCHHHHHEECCCC
YVPDSWKDSRSFINSNVMGTQNALDYALKYDAQFVFISAYLYGKPEKLPISETHRIAPNN
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
PYALSKHLAEQVCEFYSKFKNMNIIVLRLFNVYGPGQRGDFLIPTILKQVKTKKEIRVLD
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCCCCCEEHHHHHHHHHHHHCEEEEE
LSPKRDYIYLEDILNSISSALFPITGFHTFNIGSGVSYSVEEVISIAQEIAHTSLPVLSE
CCCCCCEEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
CKERKEEIFDVVANISKAKEVLGWEPIWSFRNGLAEILKVL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIDVLVSGASGFIGKPLIEKFRNQGLSVLALDRKMGDVSDPLTWSKLPETKSVIHLAGQT
CCEEEEECCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCHHCCCCHHHHHEECCCC
YVPDSWKDSRSFINSNVMGTQNALDYALKYDAQFVFISAYLYGKPEKLPISETHRIAPNN
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
PYALSKHLAEQVCEFYSKFKNMNIIVLRLFNVYGPGQRGDFLIPTILKQVKTKKEIRVLD
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCCCCCEEHHHHHHHHHHHHCEEEEE
LSPKRDYIYLEDILNSISSALFPITGFHTFNIGSGVSYSVEEVISIAQEIAHTSLPVLSE
CCCCCCEEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
CKERKEEIFDVVANISKAKEVLGWEPIWSFRNGLAEILKVL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]