Click here to switch to the map view.

The map label for this gene is yfbE [C]

Identifier: 116327890

GI number: 116327890

Start: 1389101

End: 1390354

Strand: Direct

Name: yfbE [C]

Synonym: LBL_1175

Alternate gene names: 116327890

Gene position: 1389101-1390354 (Clockwise)

Preceding gene: 116327889

Following gene: 116327891

Centisome position: 38.43

GC content: 35.41

Gene sequence:

>1254_bases
ATGTCAAAACTAGTTTATAGAGGTGGATCACCTGCGTTTTCTGGAAAGCTTATCGATTATAATCCAATTGGTAAAGAAGA
GAAAGATGCTGCTATGGCTGTACTCGAGTCTGGTAAGTTATCAGGTTTTGTGGCAACTGGTGATCATCGATTTTATGGCG
GTGAGAAAGTTCAAGAGTTCGAATCTATTTTCTCAAAGAAAATTGGTGCTGAGTATGGAATTTCCTTTAACTCAGCGACC
TCTGGTTTAGTTGCTGCAATTGGAGCTTTGAGATTGAATGTAGGAGATGAGGTTATTGTACCCGCGCAAACTATGTCAGC
TTCGGCTGCTTGCGCTCTTGCATATTCTGCAATTCCAGTATTTGCAGACGTTGAGAAAGAAACGTATGGATTAGATCCGA
ATTCAGTTCGCCAGAGGATTTCCGAAAAAACAAAAGCAATTGTAGTTGTTCATTTATACGGGCATCCCGTTAGAATGGAA
GAAATTTTAGCAATTGCTAATGAATATAACTTAAAGATTATTGAAGACTGTTCTCAAGCCCCCCTTGCTTACTATCATAG
TAAGAATGTAGGAACTTTTGGAGATATAGGTATTTTTAGCTTAAATTTTCATAAGCATATTAATTGTGGTGAAGGCGGTA
TTGCGGTTACTAATCATGAAGAATTAAAAGAAAGACTTTGTTTGATTCGAAATCATGGAGAGGTTAAAGGTTTTCCTGGT
GACTTATCTCATACTGTCGGATGGAATTTTCGTCTAACGGAACTTCAGGCGGCTATTGCTGTCGAACAAACGAAAAAGAT
GGATTTTTTGATTGGTATTAAACAAAAACAAGCAGCTAAATTAAGTAATCTTTTATCCCAATTTAAATGGATTAGGACCC
CAGTTGTGGAAAAAGATTGTTCCCACGTATATTATGATTATCCGATGCAATTTCAATTGTCCAGTAGTGGAATAAATCTC
AATCTTTTGAGAGAAGTAACAGCTTTAGAAAATCTTCCAATTACTGATTCGTATAAGCCATTGTATTGGCAATCTTTGTA
TCAAAACAAAATATGTTACGGAAAGGATCACTTTCCATTTAACTTATTGTCTGAAAAGAACGAAAACAACTATCAAAAGG
GAAGTTGTGTGAACGCAGAAAAACTATACCTACAAGAATGTCTTACTTTCGAAATATGCTCTTATGATCTAAATGATTCT
GTATTGGAATGTTTTCCAATTATGTTTGAAAAAATAGAAAAAGAATTCTTTTGA

Upstream 100 bases:

>100_bases
TGATTCTCGGAATTAGAACTGGGGATGAGTCTTATTTTAAATCGGATTTAAAGGCTACTTTATCTACAATGAATATTTTA
TTCGATATTATGAGGACTCC

Downstream 100 bases:

>100_bases
AGGCTCTGATCACATTCAATCATCCTGGAGGTAAAAATGTAGTTCTTCCAGTAGCAAGGCATCTGTTACGCGAAAATTCT
GATCTAGAATTAGACTTTGT

Product: pyridoxal-phosphate-dependent aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSKLVYRGGSPAFSGKLIDYNPIGKEEKDAAMAVLESGKLSGFVATGDHRFYGGEKVQEFESIFSKKIGAEYGISFNSAT
SGLVAAIGALRLNVGDEVIVPAQTMSASAACALAYSAIPVFADVEKETYGLDPNSVRQRISEKTKAIVVVHLYGHPVRME
EILAIANEYNLKIIEDCSQAPLAYYHSKNVGTFGDIGIFSLNFHKHINCGEGGIAVTNHEELKERLCLIRNHGEVKGFPG
DLSHTVGWNFRLTELQAAIAVEQTKKMDFLIGIKQKQAAKLSNLLSQFKWIRTPVVEKDCSHVYYDYPMQFQLSSSGINL
NLLREVTALENLPITDSYKPLYWQSLYQNKICYGKDHFPFNLLSEKNENNYQKGSCVNAEKLYLQECLTFEICSYDLNDS
VLECFPIMFEKIEKEFF

Sequences:

>Translated_417_residues
MSKLVYRGGSPAFSGKLIDYNPIGKEEKDAAMAVLESGKLSGFVATGDHRFYGGEKVQEFESIFSKKIGAEYGISFNSAT
SGLVAAIGALRLNVGDEVIVPAQTMSASAACALAYSAIPVFADVEKETYGLDPNSVRQRISEKTKAIVVVHLYGHPVRME
EILAIANEYNLKIIEDCSQAPLAYYHSKNVGTFGDIGIFSLNFHKHINCGEGGIAVTNHEELKERLCLIRNHGEVKGFPG
DLSHTVGWNFRLTELQAAIAVEQTKKMDFLIGIKQKQAAKLSNLLSQFKWIRTPVVEKDCSHVYYDYPMQFQLSSSGINL
NLLREVTALENLPITDSYKPLYWQSLYQNKICYGKDHFPFNLLSEKNENNYQKGSCVNAEKLYLQECLTFEICSYDLNDS
VLECFPIMFEKIEKEFF
>Mature_416_residues
SKLVYRGGSPAFSGKLIDYNPIGKEEKDAAMAVLESGKLSGFVATGDHRFYGGEKVQEFESIFSKKIGAEYGISFNSATS
GLVAAIGALRLNVGDEVIVPAQTMSASAACALAYSAIPVFADVEKETYGLDPNSVRQRISEKTKAIVVVHLYGHPVRMEE
ILAIANEYNLKIIEDCSQAPLAYYHSKNVGTFGDIGIFSLNFHKHINCGEGGIAVTNHEELKERLCLIRNHGEVKGFPGD
LSHTVGWNFRLTELQAAIAVEQTKKMDFLIGIKQKQAAKLSNLLSQFKWIRTPVVEKDCSHVYYDYPMQFQLSSSGINLN
LLREVTALENLPITDSYKPLYWQSLYQNKICYGKDHFPFNLLSEKNENNYQKGSCVNAEKLYLQECLTFEICSYDLNDSV
LECFPIMFEKIEKEFF

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=257, Percent_Identity=33.4630350194552, Blast_Score=138, Evalue=8e-34,
Organism=Escherichia coli, GI2367285, Length=307, Percent_Identity=28.6644951140065, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 46668; Mature: 46537

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLVYRGGSPAFSGKLIDYNPIGKEEKDAAMAVLESGKLSGFVATGDHRFYGGEKVQEF
CCCEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCEECCCHHHHHH
ESIFSKKIGAEYGISFNSATSGLVAAIGALRLNVGDEVIVPAQTMSASAACALAYSAIPV
HHHHHHHCCHHHCCCCCCCHHHHHHHHHHHEECCCCCEEECCHHCCCHHHHHHHHHHCCE
FADVEKETYGLDPNSVRQRISEKTKAIVVVHLYGHPVRMEEILAIANEYNLKIIEDCSQA
EEECCHHHCCCCHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCC
PLAYYHSKNVGTFGDIGIFSLNFHKHINCGEGGIAVTNHEELKERLCLIRNHGEVKGFPG
CEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCC
DLSHTVGWNFRLTELQAAIAVEQTKKMDFLIGIKQKQAAKLSNLLSQFKWIRTPVVEKDC
CCCCCCCCCEEHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHCCC
SHVYYDYPMQFQLSSSGINLNLLREVTALENLPITDSYKPLYWQSLYQNKICYGKDHFPF
CEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
NLLSEKNENNYQKGSCVNAEKLYLQECLTFEICSYDLNDSVLECFPIMFEKIEKEFF
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKLVYRGGSPAFSGKLIDYNPIGKEEKDAAMAVLESGKLSGFVATGDHRFYGGEKVQEF
CCEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCEECCCHHHHHH
ESIFSKKIGAEYGISFNSATSGLVAAIGALRLNVGDEVIVPAQTMSASAACALAYSAIPV
HHHHHHHCCHHHCCCCCCCHHHHHHHHHHHEECCCCCEEECCHHCCCHHHHHHHHHHCCE
FADVEKETYGLDPNSVRQRISEKTKAIVVVHLYGHPVRMEEILAIANEYNLKIIEDCSQA
EEECCHHHCCCCHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCC
PLAYYHSKNVGTFGDIGIFSLNFHKHINCGEGGIAVTNHEELKERLCLIRNHGEVKGFPG
CEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCC
DLSHTVGWNFRLTELQAAIAVEQTKKMDFLIGIKQKQAAKLSNLLSQFKWIRTPVVEKDC
CCCCCCCCCEEHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHCCC
SHVYYDYPMQFQLSSSGINLNLLREVTALENLPITDSYKPLYWQSLYQNKICYGKDHFPF
CEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
NLLSEKNENNYQKGSCVNAEKLYLQECLTFEICSYDLNDSVLECFPIMFEKIEKEFF
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]