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The map label for this gene is nifU [H]

Identifier: 116327454

GI number: 116327454

Start: 749156

End: 749590

Strand: Direct

Name: nifU [H]

Synonym: LBL_0670

Alternate gene names: 116327454

Gene position: 749156-749590 (Clockwise)

Preceding gene: 116327453

Following gene: 116327455

Centisome position: 20.73

GC content: 44.14

Gene sequence:

>435_bases
GTGTCCTTAAGCGATAGTCTCTATAAAGAAGTTATACTCGATCACTATCAAAATCCGAGATTTCGGGGTAAACTCGAACC
GGCGGATTTATCTGAACATGGGATCAATCCTCTATGCGGGGACGAGCTCGAACTTACGATTAATCTTGAGGGAGATAAAA
TTGCTGATGTTCGTGTAACGGGAAAGGGATGTTCGATTTCCCAGGCTTCCGGTTCCATGATGGCCGAATCAATTCGAGGA
AAGACGGTTCTCGAAGCGGAACATATTCTTTCCCGTTTTAAGAGTATGTTTCTTGAAAATCGGGACCCGCAGTTCGAGAA
AGAACTGGAAGACTTGGAGTCGATGGAATCCGTAAAAAAGATCCCCGCAAGAATCAAATGTGCGGTTCTTCCTTGGAATA
CTTTAGAAAGGGCACTCTCTCGAATCGAAAAATAG

Upstream 100 bases:

>100_bases
ATACCGGGGACCTGCCGCGCGAGCCTCTATCTTTACAATACAAAAGGTGACATCGATCGATTGATCGAGGGTCTAATTAA
GGTAAAGGAAATATTCTCCC

Downstream 100 bases:

>100_bases
CAGGATGAGTGGATGAAGTCAGCCCTTTTTACTTCTCATTTCGTTCATCAAGCGGTTTGATTTTTGTAAACCTGATTTTA
GGACTTTGCACATGTCGTAA

Product: NifU related protein associated with Fe-S cluster formation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MSLSDSLYKEVILDHYQNPRFRGKLEPADLSEHGINPLCGDELELTINLEGDKIADVRVTGKGCSISQASGSMMAESIRG
KTVLEAEHILSRFKSMFLENRDPQFEKELEDLESMESVKKIPARIKCAVLPWNTLERALSRIEK

Sequences:

>Translated_144_residues
MSLSDSLYKEVILDHYQNPRFRGKLEPADLSEHGINPLCGDELELTINLEGDKIADVRVTGKGCSISQASGSMMAESIRG
KTVLEAEHILSRFKSMFLENRDPQFEKELEDLESMESVKKIPARIKCAVLPWNTLERALSRIEK
>Mature_143_residues
SLSDSLYKEVILDHYQNPRFRGKLEPADLSEHGINPLCGDELELTINLEGDKIADVRVTGKGCSISQASGSMMAESIRGK
TVLEAEHILSRFKSMFLENRDPQFEKELEDLESMESVKKIPARIKCAVLPWNTLERALSRIEK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16264; Mature: 16133

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSDSLYKEVILDHYQNPRFRGKLEPADLSEHGINPLCGDELELTINLEGDKIADVRVT
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEEECCCEEEEEEEE
GKGCSISQASGSMMAESIRGKTVLEAEHILSRFKSMFLENRDPQFEKELEDLESMESVKK
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IPARIKCAVLPWNTLERALSRIEK
CCHHEEEEEECHHHHHHHHHHHCC
>Mature Secondary Structure 
SLSDSLYKEVILDHYQNPRFRGKLEPADLSEHGINPLCGDELELTINLEGDKIADVRVT
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEEECCCEEEEEEEE
GKGCSISQASGSMMAESIRGKTVLEAEHILSRFKSMFLENRDPQFEKELEDLESMESVKK
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IPARIKCAVLPWNTLERALSRIEK
CCHHEEEEEECHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]