Click here to switch to the map view.

The map label for this gene is 116249164

Identifier: 116249164

GI number: 116249164

Start: 542162

End: 543292

Strand: Reverse

Name: 116249164

Synonym: pRL120500

Alternate gene names: NA

Gene position: 543292-542162 (Counterclockwise)

Preceding gene: 116249166

Following gene: 116249163

Centisome position: 62.45

GC content: 57.65

Gene sequence:

>1131_bases
ATGACCAAAAAGGCAGTATCGCGTCGAGAGTTGCTGGGAGCATCTACGCTCGTTGGAGTAACCGCAGTTGGGGCTCTTGC
CGCCCCGGCCGTGCTGGCCCAGGCACCCACCGTCATTAAAATGCAAACATCCTGGCCCGCGTCGGACATCTGGATGGATT
TTGCCCGCCAGTACGTGCAACGGGTCGAACGAATGTCCGGCGGACGCCTGAAGTTCGAACTAATGCCTGCCGGTACGGTC
GTCGGCGCGTTTCAGGTGCTCGACGGCGTCAACGATGGCGTGATCGACGCAGCCCACACCGTTCCGGTCTATTGGTACGG
AAAGCACAAGGCAGCTTCCCTCTTCGGTACCGGGCCGGTATTTGGCGGCAGCGCAACCACCATGCTCGGATGGTTCCATC
AAGGTGGCGGCAAGGATCTATACCGAGAACTCACCCAGGACATCATGGGGCTGAACCTTTACGGCTTCTATGGCTTCCCG
ATGCCCGCGCAGCCGTTCGGCTGGTTCAAGAACCAGGTCGCGACCGTGAACGACGTCAACGGCCTCAAATATCGCACGGT
CGGGCTCGCCGCCGATCTCATGCAGAATATGGGCATGAGCGTCGCTCAACTTCCGGGCGGCGAGATCGTGCCGGCAATGG
AGCGAGGCGTCATCGACGCCTTCGAGTTCAACAATCCCTCCTCTGACCTACGGTTTGGTTCGCAGGATGTCGCCAAAAAC
TACATGCTGTCGTCCTACCATCAAGCGAGCGAATCTTTCGAGTTCCTCTTCAACAAGGATGTGTTTGACGACCTTCCTGA
CGATCTGCAGGCGATCCTGGAATATGGCGTGGAGGCAGCAAGCACGGCGAATACAGCGTCCGCGATGGACAACTATTCAA
GCGACCTTCGAAAACTCCAGGCCGAACATGGCGTGACCGTGCACCGCACTCCAAAGGAAATTCTGGATGCGCAACTGAAG
GCCTGGGATGCGATCATCCCCACGCTGGAAGCGGATGCGTTCATGAAGAAGGTGCTCGACAGTCAGCGGCAGTGGGTGGA
GAGGGTCGTGTACTACGAATTGATGAATTCCGCCGATCTCGCACTCGCCTATGAGCACTATTTCCCCGGAAAATTGAACC
TCGGAAAATAG

Upstream 100 bases:

>100_bases
TTGATACTGATCAGGAAGAGGTTGGGAGGCCTCTTGTTCAACTTAGCAGACTACCAGGAAATGCAGGGAGAATTCGACTA
CAATCCAGGGAGGAAGAACA

Downstream 100 bases:

>100_bases
ATGGTGAAGGCCCGGTATTTCCGGGCCTCGTCCCTCATCGAGGTTAGGGAGGCGCTTGCATGCTCCGTTACATTGCATTC
GCCGACGATTTGTCGGCGTG

Product: putative substrate-binding component of transporter

Products: NA

Alternate protein names: Twin-Arginine Translocation Pathway Signal; TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; Trap Dicarboxylate Transporter; TRAP Mannitol/C4-Dicarboxylate Transporter; Transporter Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; TRAP Dicarboxylate Transporter; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; TRAP Dicarboxylate Transporter DctP Subunit; Tat Pathway Signal Sequence Domain-Containing Protein; Trap-T Transport System Periplasmic Component; Periplasmic TRAP-Type Dicarboxylate Transporter Protein; C4-Dicarboxylate Transporter; TRAP Transporter; TRAP Dicarboxylate Transporter- Dctp Subunit

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MTKKAVSRRELLGASTLVGVTAVGALAAPAVLAQAPTVIKMQTSWPASDIWMDFARQYVQRVERMSGGRLKFELMPAGTV
VGAFQVLDGVNDGVIDAAHTVPVYWYGKHKAASLFGTGPVFGGSATTMLGWFHQGGGKDLYRELTQDIMGLNLYGFYGFP
MPAQPFGWFKNQVATVNDVNGLKYRTVGLAADLMQNMGMSVAQLPGGEIVPAMERGVIDAFEFNNPSSDLRFGSQDVAKN
YMLSSYHQASESFEFLFNKDVFDDLPDDLQAILEYGVEAASTANTASAMDNYSSDLRKLQAEHGVTVHRTPKEILDAQLK
AWDAIIPTLEADAFMKKVLDSQRQWVERVVYYELMNSADLALAYEHYFPGKLNLGK

Sequences:

>Translated_376_residues
MTKKAVSRRELLGASTLVGVTAVGALAAPAVLAQAPTVIKMQTSWPASDIWMDFARQYVQRVERMSGGRLKFELMPAGTV
VGAFQVLDGVNDGVIDAAHTVPVYWYGKHKAASLFGTGPVFGGSATTMLGWFHQGGGKDLYRELTQDIMGLNLYGFYGFP
MPAQPFGWFKNQVATVNDVNGLKYRTVGLAADLMQNMGMSVAQLPGGEIVPAMERGVIDAFEFNNPSSDLRFGSQDVAKN
YMLSSYHQASESFEFLFNKDVFDDLPDDLQAILEYGVEAASTANTASAMDNYSSDLRKLQAEHGVTVHRTPKEILDAQLK
AWDAIIPTLEADAFMKKVLDSQRQWVERVVYYELMNSADLALAYEHYFPGKLNLGK
>Mature_375_residues
TKKAVSRRELLGASTLVGVTAVGALAAPAVLAQAPTVIKMQTSWPASDIWMDFARQYVQRVERMSGGRLKFELMPAGTVV
GAFQVLDGVNDGVIDAAHTVPVYWYGKHKAASLFGTGPVFGGSATTMLGWFHQGGGKDLYRELTQDIMGLNLYGFYGFPM
PAQPFGWFKNQVATVNDVNGLKYRTVGLAADLMQNMGMSVAQLPGGEIVPAMERGVIDAFEFNNPSSDLRFGSQDVAKNY
MLSSYHQASESFEFLFNKDVFDDLPDDLQAILEYGVEAASTANTASAMDNYSSDLRKLQAEHGVTVHRTPKEILDAQLKA
WDAIIPTLEADAFMKKVLDSQRQWVERVVYYELMNSADLALAYEHYFPGKLNLGK

Specific function: Unknown

COG id: COG4663

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41314; Mature: 41183

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKAVSRRELLGASTLVGVTAVGALAAPAVLAQAPTVIKMQTSWPASDIWMDFARQYVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
RVERMSGGRLKFELMPAGTVVGAFQVLDGVNDGVIDAAHTVPVYWYGKHKAASLFGTGPV
HHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCHHHEECCCCC
FGGSATTMLGWFHQGGGKDLYRELTQDIMGLNLYGFYGFPMPAQPFGWFKNQVATVNDVN
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCEEECCC
GLKYRTVGLAADLMQNMGMSVAQLPGGEIVPAMERGVIDAFEFNNPSSDLRFGSQDVAKN
CCEEEHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCEEHEECCCCCHHHCCCCHHHHHH
YMLSSYHQASESFEFLFNKDVFDDLPDDLQAILEYGVEAASTANTASAMDNYSSDLRKLQ
HHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHH
AEHGVTVHRTPKEILDAQLKAWDAIIPTLEADAFMKKVLDSQRQWVERVVYYELMNSADL
HHCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ALAYEHYFPGKLNLGK
EEEEHHCCCCCCCCCC
>Mature Secondary Structure 
TKKAVSRRELLGASTLVGVTAVGALAAPAVLAQAPTVIKMQTSWPASDIWMDFARQYVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
RVERMSGGRLKFELMPAGTVVGAFQVLDGVNDGVIDAAHTVPVYWYGKHKAASLFGTGPV
HHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCHHHEECCCCC
FGGSATTMLGWFHQGGGKDLYRELTQDIMGLNLYGFYGFPMPAQPFGWFKNQVATVNDVN
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCEEECCC
GLKYRTVGLAADLMQNMGMSVAQLPGGEIVPAMERGVIDAFEFNNPSSDLRFGSQDVAKN
CCEEEHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCEEHEECCCCCHHHCCCCHHHHHH
YMLSSYHQASESFEFLFNKDVFDDLPDDLQAILEYGVEAASTANTASAMDNYSSDLRKLQ
HHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHH
AEHGVTVHRTPKEILDAQLKAWDAIIPTLEADAFMKKVLDSQRQWVERVVYYELMNSADL
HHCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ALAYEHYFPGKLNLGK
EEEEHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA