BacMap

Definition	Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession	NC_008358
Length	3,705,021

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The map label for this gene is yusZ [H]

Identifier: 114799928

GI number: 114799928

Start: 3118681

End: 3119688

Strand: Reverse

Name: yusZ [H]

Synonym: HNE_2961

Alternate gene names: 114799928

Gene position: 3119688-3118681 (Counterclockwise)

Preceding gene: 114797630

Following gene: 114797208

Centisome position: 84.2

GC content: 65.97

Gene sequence:

>1008_bases
ATGACCAAGCAAGGTGTAAGCCGCCGGCAGATGATCGGCGGGTCGGCCGCCGTGATGGGGGCAATGAGCGGAGCGCCCAA
GGCGCTCGGAGAAACCAGCCCGCAGGCGCCAGCGCCCGGCGCGCTGGAAGGAAAGACGATCCTGATCACAGGCACTGCCT
CGGGGTTCGGCCGTCTGGGGGCGGAGCATTATGCGCGCCTTGGCGCGCGCGTGTTCGCCACCATGCGCAATCTGCCGCGG
CCGGAAGCAGAGGAGCTGGTGCAGCTGGCCAGCGACGAGGATCTTTCCATTGAGGTCGTCGAGATCGACGTGATGTCAGA
CGAGAGCGTCGCGGCGGGCGTGGCAACGGTCCTGGAGCGGACGGGCGGAACACTTGACGTGCTGATCAACAATGCCGGGA
TTGGCCTCGGCGGCCCGATGGAAGTGCAGGACATGGAAGCGACAAAGCTCCTGTTCGAGACCAATGTGTTTGGCCCCCAC
AGAATGGCGCGGGCTGTGCTGCCTGCGATGCGCGCAGCGGGGAAGGGACAGATATTCCAGGTCTCCTCCCAGCTTGGCCG
GGTCATCGTGCCGGGGCTCGGGCACTACTCGCCGACGAAGTTTGCGCTGGAGGCGCTGTCGGAAGGCATGGCGTATGAGC
TTGCCGCGCACGGGATCGAGGTGACGATCATTCAGCCAGGCGGCTATCCGACCAAGATATGGGAAAAGAGCACCGCGCGC
GCGGCCGCCCTGAAAGCGCGCACGCCCCAGGAGCTGCTCGATGCCTATCCGGAAATGACGGCCGGTATGGGCGAGCCGAG
CAGCGGTGGGGGCTCAACAGACCCGATGGACATTCCCCGCGCCATTGCCGAGATCATCGCGATGCCGCGCGGCACCCGGC
CCCTGCGCCGCCCGGTTCATCCCGGCAACAAGCCACAGGAAACCATCAACGAGGTTTCGCGCGAAACGCAGCTCGCCATG
CTTGGCGGTTCGCCCTGGGCGCCGGCGGTCAAGGATGTTCTGGACTAG

Upstream 100 bases:

>100_bases
AGATGTGACCAGTGAGGCGCGCTACCCTCCAGATGGTTTTGTTTGTCTCTCGTGCTTTTCTGCCTATTGTTTCTGCCAGC
AAGCAGAGAGGGAGAGGGAT

Downstream 100 bases:

>100_bases
AAGTCCATCCGTCAGCGGATTGAGCTAGAGAAGGATGGTGCCTTTGCCGTCCTTCTCCATCGCCCGGATGTAGGAGGGGT
ATTCCCGCATCTGCTTCAGG

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MTKQGVSRRQMIGGSAAVMGAMSGAPKALGETSPQAPAPGALEGKTILITGTASGFGRLGAEHYARLGARVFATMRNLPR
PEAEELVQLASDEDLSIEVVEIDVMSDESVAAGVATVLERTGGTLDVLINNAGIGLGGPMEVQDMEATKLLFETNVFGPH
RMARAVLPAMRAAGKGQIFQVSSQLGRVIVPGLGHYSPTKFALEALSEGMAYELAAHGIEVTIIQPGGYPTKIWEKSTAR
AAALKARTPQELLDAYPEMTAGMGEPSSGGGSTDPMDIPRAIAEIIAMPRGTRPLRRPVHPGNKPQETINEVSRETQLAM
LGGSPWAPAVKDVLD

Sequences:

>Translated_335_residues
MTKQGVSRRQMIGGSAAVMGAMSGAPKALGETSPQAPAPGALEGKTILITGTASGFGRLGAEHYARLGARVFATMRNLPR
PEAEELVQLASDEDLSIEVVEIDVMSDESVAAGVATVLERTGGTLDVLINNAGIGLGGPMEVQDMEATKLLFETNVFGPH
RMARAVLPAMRAAGKGQIFQVSSQLGRVIVPGLGHYSPTKFALEALSEGMAYELAAHGIEVTIIQPGGYPTKIWEKSTAR
AAALKARTPQELLDAYPEMTAGMGEPSSGGGSTDPMDIPRAIAEIIAMPRGTRPLRRPVHPGNKPQETINEVSRETQLAM
LGGSPWAPAVKDVLD
>Mature_334_residues
TKQGVSRRQMIGGSAAVMGAMSGAPKALGETSPQAPAPGALEGKTILITGTASGFGRLGAEHYARLGARVFATMRNLPRP
EAEELVQLASDEDLSIEVVEIDVMSDESVAAGVATVLERTGGTLDVLINNAGIGLGGPMEVQDMEATKLLFETNVFGPHR
MARAVLPAMRAAGKGQIFQVSSQLGRVIVPGLGHYSPTKFALEALSEGMAYELAAHGIEVTIIQPGGYPTKIWEKSTARA
AALKARTPQELLDAYPEMTAGMGEPSSGGGSTDPMDIPRAIAEIIAMPRGTRPLRRPVHPGNKPQETINEVSRETQLAML
GGSPWAPAVKDVLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=274, Percent_Identity=33.2116788321168, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI22507405, Length=223, Percent_Identity=34.5291479820628, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI44680136, Length=297, Percent_Identity=31.6498316498317, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI44680133, Length=297, Percent_Identity=31.6498316498317, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI17738292, Length=297, Percent_Identity=31.6498316498317, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI150247226, Length=222, Percent_Identity=35.5855855855856, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI223718074, Length=215, Percent_Identity=33.4883720930233, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=30.3030303030303, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI119392083, Length=220, Percent_Identity=32.2727272727273, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI19743808, Length=192, Percent_Identity=35.4166666666667, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4503817, Length=193, Percent_Identity=28.4974093264249, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI40548397, Length=242, Percent_Identity=29.7520661157025, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI214010158, Length=242, Percent_Identity=29.7520661157025, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI214010156, Length=242, Percent_Identity=29.7520661157025, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI22758144, Length=242, Percent_Identity=29.7520661157025, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4504503, Length=206, Percent_Identity=33.495145631068, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI157739938, Length=213, Percent_Identity=26.2910798122066, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40807363, Length=199, Percent_Identity=31.1557788944724, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI50726952, Length=189, Percent_Identity=31.7460317460317, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI142976729, Length=195, Percent_Identity=28.7179487179487, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI32483357, Length=231, Percent_Identity=30.3030303030303, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7706318, Length=201, Percent_Identity=28.8557213930348, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=186, Percent_Identity=32.258064516129, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI7705855, Length=234, Percent_Identity=26.9230769230769, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI146231950, Length=202, Percent_Identity=30.6930693069307, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI38348362, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI10190746, Length=220, Percent_Identity=31.3636363636364, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=35.0515463917526, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI87082100, Length=203, Percent_Identity=35.4679802955665, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790717, Length=235, Percent_Identity=33.6170212765957, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=31.1224489795918, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=29.1208791208791, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=28.2786885245902, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI2367365, Length=197, Percent_Identity=28.4263959390863, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87082160, Length=221, Percent_Identity=26.6968325791855, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI2367175, Length=193, Percent_Identity=31.0880829015544, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=197, Percent_Identity=35.5329949238579, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17507613, Length=226, Percent_Identity=32.3008849557522, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI32563809, Length=226, Percent_Identity=32.3008849557522, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=192, Percent_Identity=30.2083333333333, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17557780, Length=200, Percent_Identity=29, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=196, Percent_Identity=31.6326530612245, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=209, Percent_Identity=28.7081339712919, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=209, Percent_Identity=29.1866028708134, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=207, Percent_Identity=29.4685990338164, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=245, Percent_Identity=27.7551020408163, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=209, Percent_Identity=29.6650717703349, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=227, Percent_Identity=28.1938325991189, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=227, Percent_Identity=28.1938325991189, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=192, Percent_Identity=30.2083333333333, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=253, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=193, Percent_Identity=29.5336787564767, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193210355, Length=218, Percent_Identity=29.8165137614679, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=196, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=201, Percent_Identity=29.3532338308458, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=191, Percent_Identity=28.7958115183246, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=30.4123711340206, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21356301, Length=193, Percent_Identity=31.6062176165803, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281364892, Length=177, Percent_Identity=32.7683615819209, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=228, Percent_Identity=28.5087719298246, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24644339, Length=228, Percent_Identity=28.5087719298246, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24647946, Length=247, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24651139, Length=236, Percent_Identity=29.2372881355932, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45553409, Length=207, Percent_Identity=28.5024154589372, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24647948, Length=207, Percent_Identity=28.5024154589372, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI23397609, Length=197, Percent_Identity=33.502538071066, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21357041, Length=228, Percent_Identity=29.3859649122807, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24643142, Length=225, Percent_Identity=30.2222222222222, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639444, Length=195, Percent_Identity=32.3076923076923, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24581726, Length=190, Percent_Identity=29.4736842105263, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640442, Length=214, Percent_Identity=26.6355140186916, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21355319, Length=226, Percent_Identity=29.2035398230088, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24580925, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35127; Mature: 34996

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQGVSRRQMIGGSAAVMGAMSGAPKALGETSPQAPAPGALEGKTILITGTASGFGRLG
CCCCCCCHHHHHCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
AEHYARLGARVFATMRNLPRPEAEELVQLASDEDLSIEVVEIDVMSDESVAAGVATVLER
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHH
TGGTLDVLINNAGIGLGGPMEVQDMEATKLLFETNVFGPHRMARAVLPAMRAAGKGQIFQ
CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEE
VSSQLGRVIVPGLGHYSPTKFALEALSEGMAYELAAHGIEVTIIQPGGYPTKIWEKSTAR
EHHHCCCEEECCCCCCCHHHHHHHHHHCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHH
AAALKARTPQELLDAYPEMTAGMGEPSSGGGSTDPMDIPRAIAEIIAMPRGTRPLRRPVH
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCC
PGNKPQETINEVSRETQLAMLGGSPWAPAVKDVLD
CCCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHCC
>Mature Secondary Structure 
TKQGVSRRQMIGGSAAVMGAMSGAPKALGETSPQAPAPGALEGKTILITGTASGFGRLG
CCCCCCHHHHHCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
AEHYARLGARVFATMRNLPRPEAEELVQLASDEDLSIEVVEIDVMSDESVAAGVATVLER
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHH
TGGTLDVLINNAGIGLGGPMEVQDMEATKLLFETNVFGPHRMARAVLPAMRAAGKGQIFQ
CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEE
VSSQLGRVIVPGLGHYSPTKFALEALSEGMAYELAAHGIEVTIIQPGGYPTKIWEKSTAR
EHHHCCCEEECCCCCCCHHHHHHHHHHCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHH
AAALKARTPQELLDAYPEMTAGMGEPSSGGGSTDPMDIPRAIAEIIAMPRGTRPLRRPVH
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCC
PGNKPQETINEVSRETQLAMLGGSPWAPAVKDVLD
CCCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]