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The map label for this gene is 114799836

Identifier: 114799836

GI number: 114799836

Start: 2228151

End: 2228876

Strand: Direct

Name: 114799836

Synonym: HNE_2143

Alternate gene names: NA

Gene position: 2228151-2228876 (Clockwise)

Preceding gene: 114797731

Following gene: 114799644

Centisome position: 60.14

GC content: 62.12

Gene sequence:

>726_bases
GTGCGCGGGAGACCGGACAAAAATTCTGCTGGCAGGCGAAAAAATACCGGCCAGATTTTTTGCTGGCCTTTGTCGATTCC
GCTGGTACGTATAACCGCGAGTGTGGGTCGGGGGACGGCGCTGCGGAGGGTGCCTTTTCTGATGTACGATCAAGGTTCTG
AACGGCCGCCAGAGGTTCTGGCCGCTGCAGACAGGCTCGTTCCGGCATTGTGGGAAGACCTGCGCCGCGTCGCCCGGCGC
GAGCGCCGCCGTGTGGGCGCGGGGCAGACCCTGCAAACCACGGCGCTGGTCAGCGAGACCTGGCTGAAACTGCGCCGCAA
AGAAAACTTCATGGACGATCAGCATTTTCTGCGGGCCGCCGCCCTCGCTATGCGATCCGTGCTGATTGATCATGCGCGCG
CCCGCCTTACGGCCAAGCGCGGCGCCGGAAAGATAGATCCGCTGACGGATGACATCGAGCCATTCTGGGAAAGCGATGAA
CGCCTTCTTGAGCTCGATGATGCGCTCACCCGGCTCAGCAAGCTGAACCCCCGACTCGCTGAAGTCGTCGAGCTACGGTT
TTTTGGCGGATATACCGAAGTTCAGGCGGCGGATATTCTGGGCGTCACGGACCGCACCATCCGGCGCGACTGGATCAAGG
CGCGCGCCTGGCTGTTCCGGGAACTCTCCGGCGTGGCTATTGAACCGCCTGCGGAAGATCATACCGGTCCCGCAACGACC
GGATGA

Upstream 100 bases:

>100_bases
ATTTCCGGATTTTAGATGTCATAAGGTAGCTCCTGTTCCCCTAACGCTCATGGCGGATGGCCCCGGACTTTTCGGGCCAG
TTCAAAAGTGAGAACGAGGT

Downstream 100 bases:

>100_bases
TGTCGATCTGACTGGCAGCGCCTGCGCCCAGCGGGGCAAGCGCCCGTTCGGCCTGCGCCAGCAATTCCGCCGCGCGCGTA
ACATCCCCTGCCTCGGCATT

Product: ECF sigma factor family protein

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; Sigma Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MRGRPDKNSAGRRKNTGQIFCWPLSIPLVRITASVGRGTALRRVPFLMYDQGSERPPEVLAAADRLVPALWEDLRRVARR
ERRRVGAGQTLQTTALVSETWLKLRRKENFMDDQHFLRAAALAMRSVLIDHARARLTAKRGAGKIDPLTDDIEPFWESDE
RLLELDDALTRLSKLNPRLAEVVELRFFGGYTEVQAADILGVTDRTIRRDWIKARAWLFRELSGVAIEPPAEDHTGPATT
G

Sequences:

>Translated_241_residues
MRGRPDKNSAGRRKNTGQIFCWPLSIPLVRITASVGRGTALRRVPFLMYDQGSERPPEVLAAADRLVPALWEDLRRVARR
ERRRVGAGQTLQTTALVSETWLKLRRKENFMDDQHFLRAAALAMRSVLIDHARARLTAKRGAGKIDPLTDDIEPFWESDE
RLLELDDALTRLSKLNPRLAEVVELRFFGGYTEVQAADILGVTDRTIRRDWIKARAWLFRELSGVAIEPPAEDHTGPATT
G
>Mature_241_residues
MRGRPDKNSAGRRKNTGQIFCWPLSIPLVRITASVGRGTALRRVPFLMYDQGSERPPEVLAAADRLVPALWEDLRRVARR
ERRRVGAGQTLQTTALVSETWLKLRRKENFMDDQHFLRAAALAMRSVLIDHARARLTAKRGAGKIDPLTDDIEPFWESDE
RLLELDDALTRLSKLNPRLAEVVELRFFGGYTEVQAADILGVTDRTIRRDWIKARAWLFRELSGVAIEPPAEDHTGPATT
G

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27290; Mature: 27290

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGRPDKNSAGRRKNTGQIFCWPLSIPLVRITASVGRGTALRRVPFLMYDQGSERPPEVL
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHEEHHHCCCCHHHHCCEEEECCCCCCCHHHH
AAADRLVPALWEDLRRVARRERRRVGAGQTLQTTALVSETWLKLRRKENFMDDQHFLRAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ALAMRSVLIDHARARLTAKRGAGKIDPLTDDIEPFWESDERLLELDDALTRLSKLNPRLA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCHHHH
EVVELRFFGGYTEVQAADILGVTDRTIRRDWIKARAWLFRELSGVAIEPPAEDHTGPATT
HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
G
C
>Mature Secondary Structure
MRGRPDKNSAGRRKNTGQIFCWPLSIPLVRITASVGRGTALRRVPFLMYDQGSERPPEVL
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHEEHHHCCCCHHHHCCEEEECCCCCCCHHHH
AAADRLVPALWEDLRRVARRERRRVGAGQTLQTTALVSETWLKLRRKENFMDDQHFLRAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ALAMRSVLIDHARARLTAKRGAGKIDPLTDDIEPFWESDERLLELDDALTRLSKLNPRLA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCHHHH
EVVELRFFGGYTEVQAADILGVTDRTIRRDWIKARAWLFRELSGVAIEPPAEDHTGPATT
HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA