| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is yfiS [H]
Identifier: 114799799
GI number: 114799799
Start: 2541876
End: 2543516
Strand: Direct
Name: yfiS [H]
Synonym: HNE_2432
Alternate gene names: 114799799
Gene position: 2541876-2543516 (Clockwise)
Preceding gene: 114797496
Following gene: 114799729
Centisome position: 68.61
GC content: 64.72
Gene sequence:
>1641_bases ATGACTGACGCGCCTGCCCCCAGCCCCTTCTCCATTCCCCTGTTCAAACGCATCTGGGTGGCCAATATCGCCTCGCAGTT TGGCGGGCTAATCCAGAGCGTGGGCGCGGCCTGGCTGATGGTGCAGCTGGGCGGAAGCGAAACGCAGATCGCGCTGGTGC AGGCTTCTGTAACGCTGCCGATCATGATCCTGTCGCTGCTGTCAGGTGCGATTGCCGACAACTATCCCCGGCGTACCGTG ATGCTGCTGTCGCAGGTCTACATGTTCATCGTGTCGGCCGTGCTTTGCGTATTTGCGTTCATGAACGGGCTGAGCCCGTG GCTGCTGCTGACATTCACATTTCTGCTGGGCTGCGGAACTGCGCTGAACGCGCCTTCCTGGCAGGCGACCGTAGGCGATA TTGTCCCGCGCCAGACGATTGCGGCGGCCGTTTCCATGAACAGCCTCGGCTTCAACATTGCCCGCACGGCCGGGCCGGCG CTCGGCGGGGCGATTGTGGCGGCGGCAGGGGCAGCGGCGGCGTTTGCCGTGAATGTGCTGAGCTATCTGGGCATCATTTA TGTGCTGCTGGCGTGGAAACCGGAGAAACCTCTGAAACCGGCGCTGAAGGAAGACCTGCGCACAGCGATCGGGGCCGGTG TGCGCTATGTGTCGATGTCGCCCCCTATCCGGCAGGTGATGGCGCGGGCGGCGCTGTTTGGCATCGCGGCGAGCGCGGTG CTTTCCCTCCTGCCGCTGGTGGCGCAGGAACTGGTCGGCGGCGGGGCGGTGACGTTTGGTATTCTCTCCGGCGCCTTCGG GATCGGCGCGGTGATCGGGGCGCTCTCCAATGCGCGCCTGCGGCGGCGCTTCACCGCCGAGAGCATTCTGCGGATGACGA TCTCGATGATCATTGCGGGGGTGGTGATTGTAGCCTTCAGCCGGGTGTTGCCCCTTACGGTGGTCGGCCTGGTGATCTGC GGGTCCGGCTGGCTGCTGTCGATGGCGACCATGAATGTGACGGTGCAGATGGCCGCGCCTCGCTGGGTGGTCGGGCGGGC ACTGTCGCTTTACCAGATGGCGGTGTTCGGGGCGATGGCTGTGGGAAGCTGGATCACCGGGCAACTGGCGGAGAATTACG GGGTAATGCAGGCGCTGCTGACGATGGCCGCCGTGCAATCGGTGAGCCTGTTTGCCGGCCTCTTCCTGCGCCTGCCCCAG GTGGAGGAGATGAACCTCGACCTGACGGGACGCTGGCGCCAACCGGACATGGAGGTGCCGGTGGAGCCGCGCAGCGGGCC GGTGCATGTGTCGGTGAAGTATCGCATTCTCGAAGCGGATATTCCCCGCTTCATGGCCGCCATGAATGAACGGCGCCGCA TTCACCTGCGCGACGGGGCGCGGGCGTGGTCGCTGGTGCGCGACCTGGGGGACGCGGAGATATGGCTGGAGCAATACAGC TTTGCGCGGTGGCTGGACTATGTGCTGCACAATGAACGGCGCACCCATGCCGATGATGTGAGTATCAACATCATCCGTTC CCTGCACCAGGGCAGCTGGCCGCCAGAGGTGCACCGGATGCTGGAGCGGCAGGTGACGAGCGTGTCGTATGATCCCGAGC TTGCCTCGCCCACCTCAAGCGACCCGACCCGGCCGCACTGA
Upstream 100 bases:
>100_bases TTGCGGGTTCTATTCAGAGCCCTGAACGCAGCTGGGACCGCCCCCTTGCGCTGAGGGGCGATCGCTTTCACCATCGGACA TCTGATTTAGATTGTTCGTA
Downstream 100 bases:
>100_bases CTTTCCCTTCCGTCGGGGCTGGCCAATGGGGCTGGCGCCATGCTTTGACTGGCGCCGACAAGACCTGACCCAATCCGGAC ACGTGGAGACATCGACCAAT
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 546; Mature: 545
Protein sequence:
>546_residues MTDAPAPSPFSIPLFKRIWVANIASQFGGLIQSVGAAWLMVQLGGSETQIALVQASVTLPIMILSLLSGAIADNYPRRTV MLLSQVYMFIVSAVLCVFAFMNGLSPWLLLTFTFLLGCGTALNAPSWQATVGDIVPRQTIAAAVSMNSLGFNIARTAGPA LGGAIVAAAGAAAAFAVNVLSYLGIIYVLLAWKPEKPLKPALKEDLRTAIGAGVRYVSMSPPIRQVMARAALFGIAASAV LSLLPLVAQELVGGGAVTFGILSGAFGIGAVIGALSNARLRRRFTAESILRMTISMIIAGVVIVAFSRVLPLTVVGLVIC GSGWLLSMATMNVTVQMAAPRWVVGRALSLYQMAVFGAMAVGSWITGQLAENYGVMQALLTMAAVQSVSLFAGLFLRLPQ VEEMNLDLTGRWRQPDMEVPVEPRSGPVHVSVKYRILEADIPRFMAAMNERRRIHLRDGARAWSLVRDLGDAEIWLEQYS FARWLDYVLHNERRTHADDVSINIIRSLHQGSWPPEVHRMLERQVTSVSYDPELASPTSSDPTRPH
Sequences:
>Translated_546_residues MTDAPAPSPFSIPLFKRIWVANIASQFGGLIQSVGAAWLMVQLGGSETQIALVQASVTLPIMILSLLSGAIADNYPRRTV MLLSQVYMFIVSAVLCVFAFMNGLSPWLLLTFTFLLGCGTALNAPSWQATVGDIVPRQTIAAAVSMNSLGFNIARTAGPA LGGAIVAAAGAAAAFAVNVLSYLGIIYVLLAWKPEKPLKPALKEDLRTAIGAGVRYVSMSPPIRQVMARAALFGIAASAV LSLLPLVAQELVGGGAVTFGILSGAFGIGAVIGALSNARLRRRFTAESILRMTISMIIAGVVIVAFSRVLPLTVVGLVIC GSGWLLSMATMNVTVQMAAPRWVVGRALSLYQMAVFGAMAVGSWITGQLAENYGVMQALLTMAAVQSVSLFAGLFLRLPQ VEEMNLDLTGRWRQPDMEVPVEPRSGPVHVSVKYRILEADIPRFMAAMNERRRIHLRDGARAWSLVRDLGDAEIWLEQYS FARWLDYVLHNERRTHADDVSINIIRSLHQGSWPPEVHRMLERQVTSVSYDPELASPTSSDPTRPH >Mature_545_residues TDAPAPSPFSIPLFKRIWVANIASQFGGLIQSVGAAWLMVQLGGSETQIALVQASVTLPIMILSLLSGAIADNYPRRTVM LLSQVYMFIVSAVLCVFAFMNGLSPWLLLTFTFLLGCGTALNAPSWQATVGDIVPRQTIAAAVSMNSLGFNIARTAGPAL GGAIVAAAGAAAAFAVNVLSYLGIIYVLLAWKPEKPLKPALKEDLRTAIGAGVRYVSMSPPIRQVMARAALFGIAASAVL SLLPLVAQELVGGGAVTFGILSGAFGIGAVIGALSNARLRRRFTAESILRMTISMIIAGVVIVAFSRVLPLTVVGLVICG SGWLLSMATMNVTVQMAAPRWVVGRALSLYQMAVFGAMAVGSWITGQLAENYGVMQALLTMAAVQSVSLFAGLFLRLPQV EEMNLDLTGRWRQPDMEVPVEPRSGPVHVSVKYRILEADIPRFMAAMNERRRIHLRDGARAWSLVRDLGDAEIWLEQYSF ARWLDYVLHNERRTHADDVSINIIRSLHQGSWPPEVHRMLERQVTSVSYDPELASPTSSDPTRPH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 58893; Mature: 58762
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAPAPSPFSIPLFKRIWVANIASQFGGLIQSVGAAWLMVQLGGSETQIALVQASVTLP CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEHHHHHH IMILSLLSGAIADNYPRRTVMLLSQVYMFIVSAVLCVFAFMNGLSPWLLLTFTFLLGCGT HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC ALNAPSWQATVGDIVPRQTIAAAVSMNSLGFNIARTAGPALGGAIVAAAGAAAAFAVNVL CCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH SYLGIIYVLLAWKPEKPLKPALKEDLRTAIGAGVRYVSMSPPIRQVMARAALFGIAASAV HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHH LSLLPLVAQELVGGGAVTFGILSGAFGIGAVIGALSNARLRRRFTAESILRMTISMIIAG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVIVAFSRVLPLTVVGLVICGSGWLLSMATMNVTVQMAAPRWVVGRALSLYQMAVFGAMA HHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHH VGSWITGQLAENYGVMQALLTMAAVQSVSLFAGLFLRLPQVEEMNLDLTGRWRQPDMEVP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEECCCCCCCCCCC VEPRSGPVHVSVKYRILEADIPRFMAAMNERRRIHLRDGARAWSLVRDLGDAEIWLEQYS CCCCCCCEEEEEEEEEEHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHH FARWLDYVLHNERRTHADDVSINIIRSLHQGSWPPEVHRMLERQVTSVSYDPELASPTSS HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC DPTRPH CCCCCC >Mature Secondary Structure TDAPAPSPFSIPLFKRIWVANIASQFGGLIQSVGAAWLMVQLGGSETQIALVQASVTLP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEHHHHHH IMILSLLSGAIADNYPRRTVMLLSQVYMFIVSAVLCVFAFMNGLSPWLLLTFTFLLGCGT HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC ALNAPSWQATVGDIVPRQTIAAAVSMNSLGFNIARTAGPALGGAIVAAAGAAAAFAVNVL CCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH SYLGIIYVLLAWKPEKPLKPALKEDLRTAIGAGVRYVSMSPPIRQVMARAALFGIAASAV HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHH LSLLPLVAQELVGGGAVTFGILSGAFGIGAVIGALSNARLRRRFTAESILRMTISMIIAG HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVIVAFSRVLPLTVVGLVICGSGWLLSMATMNVTVQMAAPRWVVGRALSLYQMAVFGAMA HHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHH VGSWITGQLAENYGVMQALLTMAAVQSVSLFAGLFLRLPQVEEMNLDLTGRWRQPDMEVP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEECCCCCCCCCCC VEPRSGPVHVSVKYRILEADIPRFMAAMNERRRIHLRDGARAWSLVRDLGDAEIWLEQYS CCCCCCCEEEEEEEEEEHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHH FARWLDYVLHNERRTHADDVSINIIRSLHQGSWPPEVHRMLERQVTSVSYDPELASPTSS HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC DPTRPH CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]