Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is murI [H]

Identifier: 114799484

GI number: 114799484

Start: 3152191

End: 3153063

Strand: Reverse

Name: murI [H]

Synonym: HNE_2992

Alternate gene names: 114799484

Gene position: 3153063-3152191 (Counterclockwise)

Preceding gene: 114798864

Following gene: 114799207

Centisome position: 85.1

GC content: 66.09

Gene sequence:

>873_bases
ATGACCGCCGACGCGCCGTTCCCGTTTGAGCCTTCGCCCGCCAGGGGGCGTGTTCTGGTGTTTGATTCCGGCGTTGGCGG
GCTCACCGTTGCCGCTGAAATCCGCGCGCTGGGGCCGCGCCTCTCGGTCCACTACGCTGCCGACACCGGCTTTTTCCCAT
ATGGGGACAAGTCCGATGAGGCCCTGCGCGCGCGCTTGCCGGTGGTTGCAAAAGCGCTGGTCGAGGCGGTCCGGCCGGAT
GTTTTCGTCATCGCCTGCAACACGGCCAGCACACTGGCGCTCCCCGAAGTGCGCGCCGTCCTCGATATTCCCGTCGTCGG
TACTGTCCCTGCCATCAAGCCGGCGGCAAAGCTCACCGAAACCGGCACCATCGGCCTCCTCGCCACGCCGGGCACCATCC
GTCGCGCCTATACGGCCCGCCTGATCGAGGAATTTGCCAGTGGCAAGCGCGTCATCCTCCATGGCAGCCTGGATCTGGTG
AAACTCGCCGAGGCTCATGCGCGGGGGGAAGACGTGCCGCCCGAGGCTTTTGCCGCCGCGCAGGCCCCGCTGTTCACTGC
GCCGGGCGGCGATCAGATCGACACGATTGTACTCGCCTGCACGCATTTCCCGCTGGTGCGCGGCCAGCTCATCGCGACGG
CGCCCCATGCCGTCAGCTATATCGATTCCGGCGCGGCCATTGCCCGCCAGACGATCCGTGTGCTGCCTGCCAGAAACGAG
TCAGGCGGACAGGGAGGCACAGCGTGCCTCACAAGTCCGCCTGAAAGGGAAGAGGGGATCACCCGCGTCCTGAGACGCTA
CGGCTTTCCCGAAGTTCAGTTCGTGGCCATCGAGCCGATCGAGATGACTTCAGCGCCTTCGGCCGAGCCATAG

Upstream 100 bases:

>100_bases
TCTTTTCTACGACGCTATTGTGCGCTGCACAACAAAACTCGTGCCAAAAGCCTGAAACGGCCCCGTTTTCGCCGCCAGAG
AATGGTCTTAACTGGGACTC

Downstream 100 bases:

>100_bases
AGCGACGGCCAGGGGCTGTCCTGAACAATCGCCACATCGGACTCGCCAAACCCGTTGAAGCGGGTGGCCATCGAACGGCC
ATAGGCGCCGATGTTGCCGA

Product: glutamate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MTADAPFPFEPSPARGRVLVFDSGVGGLTVAAEIRALGPRLSVHYAADTGFFPYGDKSDEALRARLPVVAKALVEAVRPD
VFVIACNTASTLALPEVRAVLDIPVVGTVPAIKPAAKLTETGTIGLLATPGTIRRAYTARLIEEFASGKRVILHGSLDLV
KLAEAHARGEDVPPEAFAAAQAPLFTAPGGDQIDTIVLACTHFPLVRGQLIATAPHAVSYIDSGAAIARQTIRVLPARNE
SGGQGGTACLTSPPEREEGITRVLRRYGFPEVQFVAIEPIEMTSAPSAEP

Sequences:

>Translated_290_residues
MTADAPFPFEPSPARGRVLVFDSGVGGLTVAAEIRALGPRLSVHYAADTGFFPYGDKSDEALRARLPVVAKALVEAVRPD
VFVIACNTASTLALPEVRAVLDIPVVGTVPAIKPAAKLTETGTIGLLATPGTIRRAYTARLIEEFASGKRVILHGSLDLV
KLAEAHARGEDVPPEAFAAAQAPLFTAPGGDQIDTIVLACTHFPLVRGQLIATAPHAVSYIDSGAAIARQTIRVLPARNE
SGGQGGTACLTSPPEREEGITRVLRRYGFPEVQFVAIEPIEMTSAPSAEP
>Mature_289_residues
TADAPFPFEPSPARGRVLVFDSGVGGLTVAAEIRALGPRLSVHYAADTGFFPYGDKSDEALRARLPVVAKALVEAVRPDV
FVIACNTASTLALPEVRAVLDIPVVGTVPAIKPAAKLTETGTIGLLATPGTIRRAYTARLIEEFASGKRVILHGSLDLVK
LAEAHARGEDVPPEAFAAAQAPLFTAPGGDQIDTIVLACTHFPLVRGQLIATAPHAVSYIDSGAAIARQTIRVLPARNES
GGQGGTACLTSPPEREEGITRVLRRYGFPEVQFVAIEPIEMTSAPSAEP

Specific function: Provides the (R)-glutamate required for cell wall biosynthesis [H]

COG id: COG0796

COG function: function code M; Glutamate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI87082355, Length=270, Percent_Identity=44.4444444444444, Blast_Score=194, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004391 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: =5.1.1.3 [H]

Molecular weight: Translated: 30416; Mature: 30285

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADAPFPFEPSPARGRVLVFDSGVGGLTVAAEIRALGPRLSVHYAADTGFFPYGDKSDE
CCCCCCCCCCCCCCCCEEEEEECCCCCEEHEEHHHHCCCCEEEEEEECCCCCCCCCCCCH
ALRARLPVVAKALVEAVRPDVFVIACNTASTLALPEVRAVLDIPVVGTVPAIKPAAKLTE
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCHHHHHHEECCCCCCCCCCCCHHHHCC
TGTIGLLATPGTIRRAYTARLIEEFASGKRVILHGSLDLVKLAEAHARGEDVPPEAFAAA
CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHC
QAPLFTAPGGDQIDTIVLACTHFPLVRGQLIATAPHAVSYIDSGAAIARQTIRVLPARNE
CCCEEECCCCCCHHEEEEEECCCCHHCCEEEEECCHHHHHHCCCHHHHHHHHHEECCCCC
SGGQGGTACLTSPPEREEGITRVLRRYGFPEVQFVAIEPIEMTSAPSAEP
CCCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCC
>Mature Secondary Structure 
TADAPFPFEPSPARGRVLVFDSGVGGLTVAAEIRALGPRLSVHYAADTGFFPYGDKSDE
CCCCCCCCCCCCCCCEEEEEECCCCCEEHEEHHHHCCCCEEEEEEECCCCCCCCCCCCH
ALRARLPVVAKALVEAVRPDVFVIACNTASTLALPEVRAVLDIPVVGTVPAIKPAAKLTE
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCHHHHHHEECCCCCCCCCCCCHHHHCC
TGTIGLLATPGTIRRAYTARLIEEFASGKRVILHGSLDLVKLAEAHARGEDVPPEAFAAA
CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHC
QAPLFTAPGGDQIDTIVLACTHFPLVRGQLIATAPHAVSYIDSGAAIARQTIRVLPARNE
CCCEEECCCCCCHHEEEEEECCCCHHCCEEEEECCHHHHHHCCCHHHHHHHHHEECCCCC
SGGQGGTACLTSPPEREEGITRVLRRYGFPEVQFVAIEPIEMTSAPSAEP
CCCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA