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The map label for this gene is ybgA [H]

Identifier: 114799441

GI number: 114799441

Start: 1107938

End: 1108642

Strand: Reverse

Name: ybgA [H]

Synonym: HNE_1102

Alternate gene names: 114799441

Gene position: 1108642-1107938 (Counterclockwise)

Preceding gene: 114798668

Following gene: 114797214

Centisome position: 29.92

GC content: 64.26

Gene sequence:

>705_bases
ATGCAGCCGCGTTACCGGCAGATAGCCGATGAACTTCGCCTGCTGATCGCCTCCGGCAAGCTCAAGCCCGGCGACGCTCT
GCCCACAGAGATGGAGATGTGCGAGGAGAAGGACATCTCGCGCCACACGGCGCGCGAAGCCTTGCGCATTCTCACCGAAG
ACGGCCTGATTGCCCGCCGACGCGGGGTCGGCACGGTCGTAACCACGCCGCCCACGCCCGCCTTTGCCCAGCCCATCGGC
GATTTCGAATCGATCCTCCAATACGCCCGCGATGCTGTTTTCATTCCCGAGCGCACGCGCCCCGCGAGCCCGGCTGAACT
CAAACGCATGGGCGTCGATGGTCCGTACATGGCCTATCTGGGCCTGCGCCGCGCAAGCGGGGAAGCCCCCCTCGCGGTGA
CAACCATCCTTGTGCTGAACCATCTGGCCCCGGCGCTGGAGGATGTTGCCGAGCTGAACGGCTCCATCTCCGAATGGATT
GAAGGCGAACATGGCGCGGCCGTCGCGAATGTCGTTCAACGGATGGAAGCGGTTGCGCTGGGCAAAACCGATGCCGCCCG
GCTTGGAGTACCTTCCGGCTCACCGGCATTGCGAACCTTGCGGCGCTATATCGATACCGCAGGACGCGCGATCCTGGTTT
CCGAAAGCCTGCACCCGGCCGGCCGCTTCGCCTATGAAATGAAGCTGACCCGCCAGAGGAAGTAG

Upstream 100 bases:

>100_bases
CTTACCAGCCCTGCCCTGTTTCCGGCCGGGATTGCCCCCACCCTCGGGAGTGGTCATTACAGATACTCGATTCAGAACCA
GGGAGAGGGCTTTGAACACC

Downstream 100 bases:

>100_bases
GCCGTCAGGCCACCCGTGTTTCTTCGCACAGCGTGCGGCGATAGATCTGGCCATCCTTGAACCAGTGCCAGGTGCGCGCG
CGGTGCTTGCCGCCTTCGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MQPRYRQIADELRLLIASGKLKPGDALPTEMEMCEEKDISRHTAREALRILTEDGLIARRRGVGTVVTTPPTPAFAQPIG
DFESILQYARDAVFIPERTRPASPAELKRMGVDGPYMAYLGLRRASGEAPLAVTTILVLNHLAPALEDVAELNGSISEWI
EGEHGAAVANVVQRMEAVALGKTDAARLGVPSGSPALRTLRRYIDTAGRAILVSESLHPAGRFAYEMKLTRQRK

Sequences:

>Translated_234_residues
MQPRYRQIADELRLLIASGKLKPGDALPTEMEMCEEKDISRHTAREALRILTEDGLIARRRGVGTVVTTPPTPAFAQPIG
DFESILQYARDAVFIPERTRPASPAELKRMGVDGPYMAYLGLRRASGEAPLAVTTILVLNHLAPALEDVAELNGSISEWI
EGEHGAAVANVVQRMEAVALGKTDAARLGVPSGSPALRTLRRYIDTAGRAILVSESLHPAGRFAYEMKLTRQRK
>Mature_234_residues
MQPRYRQIADELRLLIASGKLKPGDALPTEMEMCEEKDISRHTAREALRILTEDGLIARRRGVGTVVTTPPTPAFAQPIG
DFESILQYARDAVFIPERTRPASPAELKRMGVDGPYMAYLGLRRASGEAPLAVTTILVLNHLAPALEDVAELNGSISEWI
EGEHGAAVANVVQRMEAVALGKTDAARLGVPSGSPALRTLRRYIDTAGRAILVSESLHPAGRFAYEMKLTRQRK

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=66, Percent_Identity=53.030303030303, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790540, Length=207, Percent_Identity=28.9855072463768, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 25549; Mature: 25549

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPRYRQIADELRLLIASGKLKPGDALPTEMEMCEEKDISRHTAREALRILTEDGLIARR
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RGVGTVVTTPPTPAFAQPIGDFESILQYARDAVFIPERTRPASPAELKRMGVDGPYMAYL
CCCCEEEECCCCCHHHHCCHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHCCCCCHHHHH
GLRRASGEAPLAVTTILVLNHLAPALEDVAELNGSISEWIEGEHGAAVANVVQRMEAVAL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHC
GKTDAARLGVPSGSPALRTLRRYIDTAGRAILVSESLHPAGRFAYEMKLTRQRK
CCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQPRYRQIADELRLLIASGKLKPGDALPTEMEMCEEKDISRHTAREALRILTEDGLIARR
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RGVGTVVTTPPTPAFAQPIGDFESILQYARDAVFIPERTRPASPAELKRMGVDGPYMAYL
CCCCEEEECCCCCHHHHCCHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHCCCCCHHHHH
GLRRASGEAPLAVTTILVLNHLAPALEDVAELNGSISEWIEGEHGAAVANVVQRMEAVAL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHC
GKTDAARLGVPSGSPALRTLRRYIDTAGRAILVSESLHPAGRFAYEMKLTRQRK
CCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]