| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is fiu [H]
Identifier: 114798931
GI number: 114798931
Start: 2196948
End: 2199380
Strand: Direct
Name: fiu [H]
Synonym: HNE_2116
Alternate gene names: 114798931
Gene position: 2196948-2199380 (Clockwise)
Preceding gene: 114797055
Following gene: 114798632
Centisome position: 59.3
GC content: 60.05
Gene sequence:
>2433_bases ATGGCCGTTCTTGGAGGGTTCTGCCCATTTCCGCCTGTGGCCGGCCCGGCCGCATGGGAGTTTGGACCTTCCTGGCACGT TCATGGCCAGACACCCCGCCTTGCGGGTTTCCTGACAGCCAAGCCGTCCGCGAGAAGCGCATGCACCTGCGCCGCCCGGA CATTTCCCATTCTGGAGACGATAATGATACGCAGTCGCAAACATGGACTGAAAACTAGCCTTGCCCTTATCGCCGCAATG AGCGGCACCCTACATGCCCATGCCGAGGCGGATGATGCCCGCCGGAGTGATCCCGAGAAGCGGGAAGAAACGGTGATTGT CGAAGGCGAGAGCCTCTACATCGTGCCTCATGTTTCGTCGCCAAAACTGACGCAAGAGCTGGTGAACACGCCGCAGACGA TCAGCGTGATCTCCGGCCAGCTGATTGCCGACCAGGGCGCGGTCAGCCTGATGGAAGCGCTGCGCAATACGCCGGGCATC ACGATGCAGCTGGGCGAGAACGGCAACACCTCCTCAGGGGATACGTTCACGATGCGGGGCTTCTCCTCGCAAAGCTCGAT CTTCCAGGACGGTATTCGTGACCTGGGCGCGGTGACCCGTGACAGCTTTAACCTCGAGCAGATCGAGGTGGCCAAGGGGC CGGCCGGCTCCGACATCGGCCGGGGAGCATCCTCGGGCTATATCAACCAGGTTTCCAAGACACCGCTGGATGACGACTTT ACGTCACTGTTTGCGGGCGCGACCAGCGAAGGCGGCGTGCGCCTGACGGGGGACGCCAACAAGATGTTGACCGGCACGGC CGGGGTTCGCCTCAATGTGATGGTTCAGGACATGCCGGTTCCCGGCCGCGATGAAGTGACCAATAAGGGTTACGGCATTG CGCCCTCCATCGCGTTCGGCGTTGGGACGGGTACGGAGTTCCAGCTGTTCGCCCAGCACATCATTCAGGAAAATGTACCT GATGGCGGCATTCCCTCTATCGGTCTTGAGGGTTTCTACAATGCCGATGAAACGCTTCTGGCCGGCGCGGCTGTAGACCG GTCGAACTTCTATGGCAGCAAGTCTGACTTCGAGGACGTGGAAGCCAACATGATCACCGCAAAGATGATCCATGATCTTG GCGGCGGCCTGACCCTGACCAGCACTGCACGTTACGGCAAGACGCAGATGGACCGCGTGCTGACCGGCATCAATGGCCTG GACGCGCCCTCCTCCGATCCCTCGACCTGGACGGTTTCCCGTTCGCGTCAACGCGTGGACCAGACCAATGACATTCTGGG CAATCAGACGATCATCACGGGCAGCTTCAACACCGGCCGCCTGGTGCACGATTTCTCGACGGGGATTGAGGCGCTGAACG AATCCCAGAAATCGGGTTCGTTTTCCACAACCGGCCTGACGACTCCGGCCGCCTCGCTCTACAATCCTGATCCGAACATT GTTCTGCCCACCCCCTACCCTTCGGGCGGCAAGGCAGATGGCAGCACGACGACGCTTGCCGCCTTCCTTTTTGATACGAT CAATCTGGACGAAAAATGGTATTTCACCGCCGGCATTCGCGCGGAGAATTACGAGACGGATGTGAACGGTGTGACGATCA CCTCTTCACGTTCGCACCCTGATCTTCCTCCCGGCACGGCGCTTGCCTACGATCTGTCTGATGATGGCAACCTCGTCAGC TGGAAACTCGCAGGTCTCTACAAGCCGCGGGAGAATGGCAGCGTCTATATCAGCTATGGCAACTCGCTGACCCCGCCGGG CGGGGCAAACTTCTCGCTGTCGTCTGGCGAGTCCAGCATCAACAATCCCGCCTTCGATCCGCAGGAAACGCAGAACCTGG AAGTGGGCACGAAATGGGACCTGTTCGGCGAGCATCTGGCGCTGGCGGCGGCCTATTACTCCACCACCAACAAGGACGAG CTTTCCGTGCTTGATCCGGACACCAACACTTATGAACAGCTGGGCGAGCGCAAGGTGGAAGGTGTTGAGCTTTCGGCCGT TGGCAAGATTACGCCGGACTGGCAGGTTTCCGCCAGCCTGACGACCATCGATACCGAAGTCACTGAAGGGACCACGGGCA ACAACTCGGAAGGCGCTTCGTCGCGCTGGTCGCCCGACCTCGCCGCGACGGTCTGGACGACCTATAATCTGACGCCGGCC TTCACCTTTGGCGGCGGCGCGCGGTATATGGGCGAGCAGAAACGGGTGGTGAACCCCGGCACCGACATCTCCACACAGAA TGTTCCGGTTATCCCGGAAGCCTGGGTGGTGGACGCGATGGCGCGGTATCAGTTCACCGAGCGGCTGGCGCTTCAGCTGA ACGTGTATAACCTCTTTGACGAGGATTACATTTCGACGCTGAACAATTCCGGTGCACGCCTGACACCGGGCCAACCGACA TCTGCGTATCTTTCGCTGAACGTCCGGTTCTAG
Upstream 100 bases:
>100_bases GCTGCTCCGGGTCTTCCGGCGTTGGTGAGTCCTGTGCATCGGGCATGGGCCAGCGCCGCCAGCCACCCATTGGAGAGGAG AGGTAATCCATCCCGGCCCG
Downstream 100 bases:
>100_bases AGACGAGGAAAACGGCCATGCTCCTGCACATTCCGGAAGTCCTGAACGGGCAGGAGCTGGCCACGCTCCGCGAAACACTT GCTGGCGCAGACTGGCAAGA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Ferric iron uptake protein; TonB-dependent receptor fiu [H]
Number of amino acids: Translated: 810; Mature: 809
Protein sequence:
>810_residues MAVLGGFCPFPPVAGPAAWEFGPSWHVHGQTPRLAGFLTAKPSARSACTCAARTFPILETIMIRSRKHGLKTSLALIAAM SGTLHAHAEADDARRSDPEKREETVIVEGESLYIVPHVSSPKLTQELVNTPQTISVISGQLIADQGAVSLMEALRNTPGI TMQLGENGNTSSGDTFTMRGFSSQSSIFQDGIRDLGAVTRDSFNLEQIEVAKGPAGSDIGRGASSGYINQVSKTPLDDDF TSLFAGATSEGGVRLTGDANKMLTGTAGVRLNVMVQDMPVPGRDEVTNKGYGIAPSIAFGVGTGTEFQLFAQHIIQENVP DGGIPSIGLEGFYNADETLLAGAAVDRSNFYGSKSDFEDVEANMITAKMIHDLGGGLTLTSTARYGKTQMDRVLTGINGL DAPSSDPSTWTVSRSRQRVDQTNDILGNQTIITGSFNTGRLVHDFSTGIEALNESQKSGSFSTTGLTTPAASLYNPDPNI VLPTPYPSGGKADGSTTTLAAFLFDTINLDEKWYFTAGIRAENYETDVNGVTITSSRSHPDLPPGTALAYDLSDDGNLVS WKLAGLYKPRENGSVYISYGNSLTPPGGANFSLSSGESSINNPAFDPQETQNLEVGTKWDLFGEHLALAAAYYSTTNKDE LSVLDPDTNTYEQLGERKVEGVELSAVGKITPDWQVSASLTTIDTEVTEGTTGNNSEGASSRWSPDLAATVWTTYNLTPA FTFGGGARYMGEQKRVVNPGTDISTQNVPVIPEAWVVDAMARYQFTERLALQLNVYNLFDEDYISTLNNSGARLTPGQPT SAYLSLNVRF
Sequences:
>Translated_810_residues MAVLGGFCPFPPVAGPAAWEFGPSWHVHGQTPRLAGFLTAKPSARSACTCAARTFPILETIMIRSRKHGLKTSLALIAAM SGTLHAHAEADDARRSDPEKREETVIVEGESLYIVPHVSSPKLTQELVNTPQTISVISGQLIADQGAVSLMEALRNTPGI TMQLGENGNTSSGDTFTMRGFSSQSSIFQDGIRDLGAVTRDSFNLEQIEVAKGPAGSDIGRGASSGYINQVSKTPLDDDF TSLFAGATSEGGVRLTGDANKMLTGTAGVRLNVMVQDMPVPGRDEVTNKGYGIAPSIAFGVGTGTEFQLFAQHIIQENVP DGGIPSIGLEGFYNADETLLAGAAVDRSNFYGSKSDFEDVEANMITAKMIHDLGGGLTLTSTARYGKTQMDRVLTGINGL DAPSSDPSTWTVSRSRQRVDQTNDILGNQTIITGSFNTGRLVHDFSTGIEALNESQKSGSFSTTGLTTPAASLYNPDPNI VLPTPYPSGGKADGSTTTLAAFLFDTINLDEKWYFTAGIRAENYETDVNGVTITSSRSHPDLPPGTALAYDLSDDGNLVS WKLAGLYKPRENGSVYISYGNSLTPPGGANFSLSSGESSINNPAFDPQETQNLEVGTKWDLFGEHLALAAAYYSTTNKDE LSVLDPDTNTYEQLGERKVEGVELSAVGKITPDWQVSASLTTIDTEVTEGTTGNNSEGASSRWSPDLAATVWTTYNLTPA FTFGGGARYMGEQKRVVNPGTDISTQNVPVIPEAWVVDAMARYQFTERLALQLNVYNLFDEDYISTLNNSGARLTPGQPT SAYLSLNVRF >Mature_809_residues AVLGGFCPFPPVAGPAAWEFGPSWHVHGQTPRLAGFLTAKPSARSACTCAARTFPILETIMIRSRKHGLKTSLALIAAMS GTLHAHAEADDARRSDPEKREETVIVEGESLYIVPHVSSPKLTQELVNTPQTISVISGQLIADQGAVSLMEALRNTPGIT MQLGENGNTSSGDTFTMRGFSSQSSIFQDGIRDLGAVTRDSFNLEQIEVAKGPAGSDIGRGASSGYINQVSKTPLDDDFT SLFAGATSEGGVRLTGDANKMLTGTAGVRLNVMVQDMPVPGRDEVTNKGYGIAPSIAFGVGTGTEFQLFAQHIIQENVPD GGIPSIGLEGFYNADETLLAGAAVDRSNFYGSKSDFEDVEANMITAKMIHDLGGGLTLTSTARYGKTQMDRVLTGINGLD APSSDPSTWTVSRSRQRVDQTNDILGNQTIITGSFNTGRLVHDFSTGIEALNESQKSGSFSTTGLTTPAASLYNPDPNIV LPTPYPSGGKADGSTTTLAAFLFDTINLDEKWYFTAGIRAENYETDVNGVTITSSRSHPDLPPGTALAYDLSDDGNLVSW KLAGLYKPRENGSVYISYGNSLTPPGGANFSLSSGESSINNPAFDPQETQNLEVGTKWDLFGEHLALAAAYYSTTNKDEL SVLDPDTNTYEQLGERKVEGVELSAVGKITPDWQVSASLTTIDTEVTEGTTGNNSEGASSRWSPDLAATVWTTYNLTPAF TFGGGARYMGEQKRVVNPGTDISTQNVPVIPEAWVVDAMARYQFTERLALQLNVYNLFDEDYISTLNNSGARLTPGQPTS AYLSLNVRF
Specific function: Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein
COG id: COG4774
COG function: function code P; Outer membrane receptor for monomeric catechols
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=728, Percent_Identity=39.1483516483516, Blast_Score=484, Evalue=1e-137, Organism=Escherichia coli, GI1786344, Length=787, Percent_Identity=22.2363405336722, Blast_Score=94, Evalue=5e-20, Organism=Escherichia coli, GI1787344, Length=753, Percent_Identity=23.7715803452855, Blast_Score=83, Evalue=7e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 86431; Mature: 86299
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLGGFCPFPPVAGPAAWEFGPSWHVHGQTPRLAGFLTAKPSARSACTCAARTFPILET CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH IMIRSRKHGLKTSLALIAAMSGTLHAHAEADDARRSDPEKREETVIVEGESLYIVPHVSS HHHHHHHCCHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHCCEEEEECCEEEEEECCCC PKLTQELVNTPQTISVISGQLIADQGAVSLMEALRNTPGITMQLGENGNTSSGDTFTMRG CHHHHHHHCCCCEEEHHCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEC FSSQSSIFQDGIRDLGAVTRDSFNLEQIEVAKGPAGSDIGRGASSGYINQVSKTPLDDDF CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHH TSLFAGATSEGGVRLTGDANKMLTGTAGVRLNVMVQDMPVPGRDEVTNKGYGIAPSIAFG HHHHCCCCCCCCEEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEE VGTGTEFQLFAQHIIQENVPDGGIPSIGLEGFYNADETLLAGAAVDRSNFYGSKSDFEDV CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHH EANMITAKMIHDLGGGLTLTSTARYGKTQMDRVLTGINGLDAPSSDPSTWTVSRSRQRVD HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHH QTNDILGNQTIITGSFNTGRLVHDFSTGIEALNESQKSGSFSTTGLTTPAASLYNPDPNI HHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHCCCCCCE VLPTPYPSGGKADGSTTTLAAFLFDTINLDEKWYFTAGIRAENYETDVNGVTITSSRSHP EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC DLPPGTALAYDLSDDGNLVSWKLAGLYKPRENGSVYISYGNSLTPPGGANFSLSSGESSI CCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEECCCCCCC NNPAFDPQETQNLEVGTKWDLFGEHLALAAAYYSTTNKDELSVLDPDTNTYEQLGERKVE CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCC GVELSAVGKITPDWQVSASLTTIDTEVTEGTTGNNSEGASSRWSPDLAATVWTTYNLTPA CEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEE FTFGGGARYMGEQKRVVNPGTDISTQNVPVIPEAWVVDAMARYQFTERLALQLNVYNLFD EEECCCHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEHHHCC EDYISTLNNSGARLTPGQPTSAYLSLNVRF HHHHHHHCCCCCEECCCCCCEEEEEEEEEC >Mature Secondary Structure AVLGGFCPFPPVAGPAAWEFGPSWHVHGQTPRLAGFLTAKPSARSACTCAARTFPILET CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH IMIRSRKHGLKTSLALIAAMSGTLHAHAEADDARRSDPEKREETVIVEGESLYIVPHVSS HHHHHHHCCHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHCCEEEEECCEEEEEECCCC PKLTQELVNTPQTISVISGQLIADQGAVSLMEALRNTPGITMQLGENGNTSSGDTFTMRG CHHHHHHHCCCCEEEHHCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEC FSSQSSIFQDGIRDLGAVTRDSFNLEQIEVAKGPAGSDIGRGASSGYINQVSKTPLDDDF CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHH TSLFAGATSEGGVRLTGDANKMLTGTAGVRLNVMVQDMPVPGRDEVTNKGYGIAPSIAFG HHHHCCCCCCCCEEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEE VGTGTEFQLFAQHIIQENVPDGGIPSIGLEGFYNADETLLAGAAVDRSNFYGSKSDFEDV CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHH EANMITAKMIHDLGGGLTLTSTARYGKTQMDRVLTGINGLDAPSSDPSTWTVSRSRQRVD HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHHH QTNDILGNQTIITGSFNTGRLVHDFSTGIEALNESQKSGSFSTTGLTTPAASLYNPDPNI HHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHCCCCCCE VLPTPYPSGGKADGSTTTLAAFLFDTINLDEKWYFTAGIRAENYETDVNGVTITSSRSHP EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCC DLPPGTALAYDLSDDGNLVSWKLAGLYKPRENGSVYISYGNSLTPPGGANFSLSSGESSI CCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCEEECCCCCCC NNPAFDPQETQNLEVGTKWDLFGEHLALAAAYYSTTNKDELSVLDPDTNTYEQLGERKVE CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCC GVELSAVGKITPDWQVSASLTTIDTEVTEGTTGNNSEGASSRWSPDLAATVWTTYNLTPA CEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEE FTFGGGARYMGEQKRVVNPGTDISTQNVPVIPEAWVVDAMARYQFTERLALQLNVYNLFD EEECCCHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEHHHCC EDYISTLNNSGARLTPGQPTSAYLSLNVRF HHHHHHHCCCCCEECCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]