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The map label for this gene is ybiX [C]

Identifier: 114798632

GI number: 114798632

Start: 2199398

End: 2200078

Strand: Direct

Name: ybiX [C]

Synonym: HNE_2117

Alternate gene names: 114798632

Gene position: 2199398-2200078 (Clockwise)

Preceding gene: 114798931

Following gene: 114797920

Centisome position: 59.36

GC content: 61.67

Gene sequence:

>681_bases
ATGCTCCTGCACATTCCGGAAGTCCTGAACGGGCAGGAGCTGGCCACGCTCCGCGAAACACTTGCTGGCGCAGACTGGCA
AGATGGCGCCGCCACCGCCGGCGCGCAAGCCGTCCGTGTGAAGCAGAATCTGCAACTGCCCGCGGGCGCGCCGGATGCCC
GGCCGATGGGCGAATTGGTCAAGGCGGCTCTGCTGCGCCATCCGCTGTTCCAGTCTGCCGCCCTGCCCCATACCGTTCTG
ACGCCCCGGTTTAACCGGTATGAAGGCGGCGGGCATTATGGCAATCATGTGGACAGCGCCATTCATGCCGACCCTTTTCT
GGGTGTCAGTGTACGCACTGATGTTTCGACAACCGTGTTCCTGAATGATCCTGAAGACTATGATGGCGGCGAACTGATCG
TCGAGGACACGTATGGTGTTCATGAAGTGAAACTTCCGGCGGGCGACGCGATCCTCTACCCTGCCACCAGCCTGCACCGC
GTGGAGTCGGTAACGCGGGGCACGCGGCTGGCCTCTTTCCTTTGGACACAAAGCCGCGTGCGCGATGATGCGCGCCGGGG
GATGCTGTTCCAACTCGATATGACCATTCTTTCCCTGCGCGGGAAGTTGGCCGACGCGCCCGAAGTGGTCGCTTTGACGG
GACATTATCACAACCTTTTGCGCCAATGGGCGGACGCATGA

Upstream 100 bases:

>100_bases
TTTCGACGCTGAACAATTCCGGTGCACGCCTGACACCGGGCCAACCGACATCTGCGTATCTTTCGCTGAACGTCCGGTTC
TAGAGACGAGGAAAACGGCC

Downstream 100 bases:

>100_bases
GCGCGCCGGGTTATCCGTTTGCGGTCATTCCGGCCGATGTGGTAAGCGCGGGCGATTATGCCCGTCATGCCGAGGCGATG
CTTGATCCGCGCGTCTGGGC

Product: 2OG-Fe(II) oxygenase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MLLHIPEVLNGQELATLRETLAGADWQDGAATAGAQAVRVKQNLQLPAGAPDARPMGELVKAALLRHPLFQSAALPHTVL
TPRFNRYEGGGHYGNHVDSAIHADPFLGVSVRTDVSTTVFLNDPEDYDGGELIVEDTYGVHEVKLPAGDAILYPATSLHR
VESVTRGTRLASFLWTQSRVRDDARRGMLFQLDMTILSLRGKLADAPEVVALTGHYHNLLRQWADA

Sequences:

>Translated_226_residues
MLLHIPEVLNGQELATLRETLAGADWQDGAATAGAQAVRVKQNLQLPAGAPDARPMGELVKAALLRHPLFQSAALPHTVL
TPRFNRYEGGGHYGNHVDSAIHADPFLGVSVRTDVSTTVFLNDPEDYDGGELIVEDTYGVHEVKLPAGDAILYPATSLHR
VESVTRGTRLASFLWTQSRVRDDARRGMLFQLDMTILSLRGKLADAPEVVALTGHYHNLLRQWADA
>Mature_226_residues
MLLHIPEVLNGQELATLRETLAGADWQDGAATAGAQAVRVKQNLQLPAGAPDARPMGELVKAALLRHPLFQSAALPHTVL
TPRFNRYEGGGHYGNHVDSAIHADPFLGVSVRTDVSTTVFLNDPEDYDGGELIVEDTYGVHEVKLPAGDAILYPATSLHR
VESVTRGTRLASFLWTQSRVRDDARRGMLFQLDMTILSLRGKLADAPEVVALTGHYHNLLRQWADA

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=225, Percent_Identity=50.2222222222222, Blast_Score=233, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2117_HYPNA (Q0C0C9)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_760814.1
- ProteinModelPortal:   Q0C0C9
- SMR:   Q0C0C9
- STRING:   Q0C0C9
- GeneID:   4289891
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_2117
- NMPDR:   fig|228405.5.peg.2039
- TIGR:   HNE_2117
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   NLIRYWA
- PhylomeDB:   Q0C0C9
- BioCyc:   HNEP81032:HNE_2117-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 24660; Mature: 24660

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 169-169

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLHIPEVLNGQELATLRETLAGADWQDGAATAGAQAVRVKQNLQLPAGAPDARPMGELV
CEEECCCHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHEEHHHCCCCCCCCCCCCCHHHHH
KAALLRHPLFQSAALPHTVLTPRFNRYEGGGHYGNHVDSAIHADPFLGVSVRTDVSTTVF
HHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCEEEEE
LNDPEDYDGGELIVEDTYGVHEVKLPAGDAILYPATSLHRVESVTRGTRLASFLWTQSRV
EECCCCCCCCEEEEECCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
RDDARRGMLFQLDMTILSLRGKLADAPEVVALTGHYHNLLRQWADA
HHHHHCCEEEEEHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHCC
>Mature Secondary Structure
MLLHIPEVLNGQELATLRETLAGADWQDGAATAGAQAVRVKQNLQLPAGAPDARPMGELV
CEEECCCHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHEEHHHCCCCCCCCCCCCCHHHHH
KAALLRHPLFQSAALPHTVLTPRFNRYEGGGHYGNHVDSAIHADPFLGVSVRTDVSTTVF
HHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCEEEEE
LNDPEDYDGGELIVEDTYGVHEVKLPAGDAILYPATSLHRVESVTRGTRLASFLWTQSRV
EECCCCCCCCEEEEECCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
RDDARRGMLFQLDMTILSLRGKLADAPEVVALTGHYHNLLRQWADA
HHHHHCCEEEEEHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA