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The map label for this gene is yciL [C]

Identifier: 114798538

GI number: 114798538

Start: 955746

End: 956663

Strand: Reverse

Name: yciL [C]

Synonym: HNE_0940

Alternate gene names: 114798538

Gene position: 956663-955746 (Counterclockwise)

Preceding gene: 114797525

Following gene: 114798162

Centisome position: 25.82

GC content: 64.92

Gene sequence:

>918_bases
ATGACGGAGCGTCGCGAGACGGGCCGCCCAGCCCGAAAGCCTTCCAGCCCCAAACGGGCACCTGGCCCCAAAAGCAAATC
GACCGCCACCCCGGCTGACTGGAGCGAGGGCGAGCGGATTGCCAAATACCTCGCCCGCGCCGGGGTTGCCTCCCGCCGCG
AGGTGGAGCGCCTGATCGAAGCGGGCGAAGTAACGGTCAATGGCCAGAAGCTGACCTCGCCCGCCTTCAAGGTAACCGGC
CGGGAAGCGATAAAGGTTGGCCGCAAGGTCATCCAGGCGCCCGATGCCAGCCGTCTCTGGCGCTATCACAAGCCCTCCGG
CCTGATCACGACCACCAACGACCCCGCCGGGCGCCGGACAATCTTTGACGAGCTTCCAAAATCCCTCCCCCGCACTGTGA
CGGTCGGACGGCTCGACCTGACGACAGAGGGCCTGCTGCTGCTGACGAACGATGGCGAGCTGGCCCGCTTCCTGGAACTG
CCCAAATCGGCGCTGGAGCGCACCTATCGGGTCCGCGCCAAAGGCACCGTGACCCAGCTGAAGATCGACGAACTGGCCAG
CGGCATCACCGTTGAAGGCGTGAAGTATCAGCCTATCAAGGCCGTCTTCGATCGGGAGATGGGCGCCAACTCCTGGCTGA
CCGTGACGCTGACTGAGGGCAAGAACCGCGAAGTTCGTAAAGCGCTGGAGTCGGTCGGCCTCACCGTGAACCGCCTCATC
CGGGTAAGTTACGGTCCGTTCCTGCTGGCAGACCTCAAGCCCGGACAGGTGGATGAAGTGCCGCCTGACCTGCTGGAAAC
GGCGCTGGCCCTGTTGGGACATGAGGTGGATACGGCGCCCGAGAAGCCTGCGCCTGCCGCTAAGTCACGCCTTGGCAGAC
GGGGGCCTTCGGCTAGAGTGAAGGGGAAGCGGTCGTAG

Upstream 100 bases:

>100_bases
AATTCCCATCTGGATGGCGACTGAGGTGGCCCTTGGCCTTGCTATTGGCGCGCCAGTCCTGCAATTCCTCGGCTGAAACA
AGTCACAGAAAGACATTGCC

Downstream 100 bases:

>100_bases
ACGCCGCAAACCCCTACTCTGGAGGAATTTCCCATGTCCGATTCAGCTGTGCTGGCGGTTCCGCCGGACACAAAGAAAGA
CCCTGCCCGCCGTATGAGCG

Product: pseudouridine synthase rsuA family protein

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTERRETGRPARKPSSPKRAPGPKSKSTATPADWSEGERIAKYLARAGVASRREVERLIEAGEVTVNGQKLTSPAFKVTG
REAIKVGRKVIQAPDASRLWRYHKPSGLITTTNDPAGRRTIFDELPKSLPRTVTVGRLDLTTEGLLLLTNDGELARFLEL
PKSALERTYRVRAKGTVTQLKIDELASGITVEGVKYQPIKAVFDREMGANSWLTVTLTEGKNREVRKALESVGLTVNRLI
RVSYGPFLLADLKPGQVDEVPPDLLETALALLGHEVDTAPEKPAPAAKSRLGRRGPSARVKGKRS

Sequences:

>Translated_305_residues
MTERRETGRPARKPSSPKRAPGPKSKSTATPADWSEGERIAKYLARAGVASRREVERLIEAGEVTVNGQKLTSPAFKVTG
REAIKVGRKVIQAPDASRLWRYHKPSGLITTTNDPAGRRTIFDELPKSLPRTVTVGRLDLTTEGLLLLTNDGELARFLEL
PKSALERTYRVRAKGTVTQLKIDELASGITVEGVKYQPIKAVFDREMGANSWLTVTLTEGKNREVRKALESVGLTVNRLI
RVSYGPFLLADLKPGQVDEVPPDLLETALALLGHEVDTAPEKPAPAAKSRLGRRGPSARVKGKRS
>Mature_304_residues
TERRETGRPARKPSSPKRAPGPKSKSTATPADWSEGERIAKYLARAGVASRREVERLIEAGEVTVNGQKLTSPAFKVTGR
EAIKVGRKVIQAPDASRLWRYHKPSGLITTTNDPAGRRTIFDELPKSLPRTVTVGRLDLTTEGLLLLTNDGELARFLELP
KSALERTYRVRAKGTVTQLKIDELASGITVEGVKYQPIKAVFDREMGANSWLTVTLTEGKNREVRKALESVGLTVNRLIR
VSYGPFLLADLKPGQVDEVPPDLLETALALLGHEVDTAPEKPAPAAKSRLGRRGPSARVKGKRS

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787524, Length=221, Percent_Identity=46.1538461538462, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1790453, Length=236, Percent_Identity=29.2372881355932, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081838, Length=179, Percent_Identity=32.4022346368715, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788510, Length=219, Percent_Identity=27.3972602739726, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 33383; Mature: 33252

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERRETGRPARKPSSPKRAPGPKSKSTATPADWSEGERIAKYLARAGVASRREVERLIE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
AGEVTVNGQKLTSPAFKVTGREAIKVGRKVIQAPDASRLWRYHKPSGLITTTNDPAGRRT
CCCEEECCCEECCCHHHHCCHHHHHHHHHHHCCCCHHHHHHEECCCCEEEECCCCCCHHH
IFDELPKSLPRTVTVGRLDLTTEGLLLLTNDGELARFLELPKSALERTYRVRAKGTVTQL
HHHHHHHHCCCEEEECEEEECCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCEEEE
KIDELASGITVEGVKYQPIKAVFDREMGANSWLTVTLTEGKNREVRKALESVGLTVNRLI
EHHHHHCCCEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHE
RVSYGPFLLADLKPGQVDEVPPDLLETALALLGHEVDTAPEKPAPAAKSRLGRRGPSARV
EECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCC
KGKRS
CCCCC
>Mature Secondary Structure 
TERRETGRPARKPSSPKRAPGPKSKSTATPADWSEGERIAKYLARAGVASRREVERLIE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
AGEVTVNGQKLTSPAFKVTGREAIKVGRKVIQAPDASRLWRYHKPSGLITTTNDPAGRRT
CCCEEECCCEECCCHHHHCCHHHHHHHHHHHCCCCHHHHHHEECCCCEEEECCCCCCHHH
IFDELPKSLPRTVTVGRLDLTTEGLLLLTNDGELARFLELPKSALERTYRVRAKGTVTQL
HHHHHHHHCCCEEEECEEEECCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCEEEE
KIDELASGITVEGVKYQPIKAVFDREMGANSWLTVTLTEGKNREVRKALESVGLTVNRLI
EHHHHHCCCEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHE
RVSYGPFLLADLKPGQVDEVPPDLLETALALLGHEVDTAPEKPAPAAKSRLGRRGPSARV
EECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCC
KGKRS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA