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The map label for this gene is ygcF [C]

Identifier: 114798300

GI number: 114798300

Start: 527979

End: 528626

Strand: Direct

Name: ygcF [C]

Synonym: HNE_0532

Alternate gene names: 114798300

Gene position: 527979-528626 (Clockwise)

Preceding gene: 114799592

Following gene: 114797313

Centisome position: 14.25

GC content: 61.27

Gene sequence:

>648_bases
ATGACCTATTCTGTCAAAGAGGCCTTCTATACCCTGCAGGGCGAAGGCGCCCATACCGGCCGCGCGGCGGTCTTCCTGCG
CTTTGCCGGCTGCAACCTCTGGAGCGGGCTGGAGCGCGACCGGGAAAAGGCCGTCTGCCGCTTCTGCGACACCGATTTTG
TCGGCACCAATGGGGAAGGGGGCGGCAAGTTCCGCGAGCCCGGCCTGCTCGCCGCCCATATAGAGTCCATCTGGCAGGCC
AATGCATCTCCCGGCGGGCGCCCCTATGTCGTCTGCACGGGCGGAGAGCCGCTGATGCAGCTCGATGAACCCCTGATCGG
CGCGCTGCATGAGGCCGGCTTTGAAATCGCCATTGAAACCAATGGCACGCTGCCCGCGCCCGCCTCGATTGACTGGATCT
GCGTCAGCCCCAAGGCCAACGCCCCCCTCGCCCAGAAATCAGGCAATGAGTTAAAGCTCGTTTACCCTCAAACCGAGCCC
GAGGCGCAACCAGAATGCTTTGAAACACTGGACTTTGAGCACTTTTTCCTCCAACCGAGGGACGATGGACCCAGCGTCAG
CCATGTGGCGGCGGTGGCCAACTATTGCTTGAAGAATCCAAAATGGCGCCTGAGCTTGCAAACACACAAACTGACCGGGC
TTCCTTGA

Upstream 100 bases:

>100_bases
GCGCGCGCCATGACTGGGGCTATGGCTGCGGCACCTGCCCGGCCTGCGAACTCAGGTCAAATGGCTGGCAGCGCTGGCAG
GATGGCAAGGCGGCCGCCCC

Downstream 100 bases:

>100_bases
AAGAGGGCCTGAAAGCAGAAGGTCAGATTTTCGAGATTTCGAAGGCGGTGTTCTTCGAGGCGGCCCATTTCATGGGCGGC
AAGCCCGAAGGCCATCCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTYSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEGGGKFREPGLLAAHIESIWQA
NASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIETNGTLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEP
EAQPECFETLDFEHFFLQPRDDGPSVSHVAAVANYCLKNPKWRLSLQTHKLTGLP

Sequences:

>Translated_215_residues
MTYSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEGGGKFREPGLLAAHIESIWQA
NASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIETNGTLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEP
EAQPECFETLDFEHFFLQPRDDGPSVSHVAAVANYCLKNPKWRLSLQTHKLTGLP
>Mature_214_residues
TYSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEGGGKFREPGLLAAHIESIWQAN
ASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIETNGTLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEPE
AQPECFETLDFEHFFLQPRDDGPSVSHVAAVANYCLKNPKWRLSLQTHKLTGLP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23406; Mature: 23274

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEG
CCCCCCCEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GGKFREPGLLAAHIESIWQANASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIET
CCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCHHHHHHHHHCCEEEEEEC
NGTLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEPEAQPECFETLDFEHFFLQPR
CCCCCCCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHCCCEEEEEEEC
DDGPSVSHVAAVANYCLKNPKWRLSLQTHKLTGLP
CCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
>Mature Secondary Structure 
TYSVKEAFYTLQGEGAHTGRAAVFLRFAGCNLWSGLERDREKAVCRFCDTDFVGTNGEG
CCCCCCEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GGKFREPGLLAAHIESIWQANASPGGRPYVVCTGGEPLMQLDEPLIGALHEAGFEIAIET
CCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCHHHHHHHHHCCEEEEEEC
NGTLPAPASIDWICVSPKANAPLAQKSGNELKLVYPQTEPEAQPECFETLDFEHFFLQPR
CCCCCCCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHCCCEEEEEEEC
DDGPSVSHVAAVANYCLKNPKWRLSLQTHKLTGLP
CCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]