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The map label for this gene is yvoA [H]

Identifier: 114798258

GI number: 114798258

Start: 1118697

End: 1119494

Strand: Reverse

Name: yvoA [H]

Synonym: HNE_1111

Alternate gene names: 114798258

Gene position: 1119494-1118697 (Counterclockwise)

Preceding gene: 114799416

Following gene: 114798507

Centisome position: 30.22

GC content: 62.53

Gene sequence:

>798_bases
ATGGCGGCCGACTCTTCACTCAGCCTGACTGCCGATCTCATCGACGAGACGGCCGGCGCCCCCCTTTACCAGCAGATCTA
CGACCTTCTGCGAGCAAAAATCGTCAGCGGAGAGCTGGGCCTGAACACACGCCTGCCCGCCGAGCAGGAGCTGACCGAAA
TGCTCGGCGTCTCCCGCATCACGGTGAAACGCGCCCTGAATGAGCTGGCTGTCGCCGGTTTTGTCCGCCGCCAGCGCGGC
ATCGGCACGGTCATCACTTTCGACGCGGCCGCGCCCACCGTCAAAGGCAGCTTTGAAAACCTGATCGATGGCCTCACCCG
TATGGGCGTTGAAACCCAGGTCCAGCTGCTCGACTGCACAATGGCAACCGCGAGCCCTGCAATCTGCGACACGTTGGAGC
TGCCCCACGGGTCGTCGGTCCAGCGCATCGTGCGCCTCCGCCGCCTGGGCGGCGAGCCTTTCTCCTACCTCATCACCTAC
ATCCCGGAAGATGTGGCCGAAGGATATTCGGAAGACGAACTTGCGACAGAATCGCTCATCAAGCTGCTGGAAAAAGCCGG
TCATGCGCCGGTCGAGGCCGACCAGACGATCATGGCCGAAGCTGCCGAAGCTGCCGTCGCGGCCAATCTCGGCATCGCGC
CGGGCTCGCCCCTCCTGCGCATTCACCGCGTGATGCGCGACAAGAGCGGCCGTCCGGTTCAGGATATTACAGCCCACTAC
CGCTCTGACCGTTTTCAGTACCATATGCGCCTCACACGTAACACGGCGCGCCAGAAAGACTGGAAAACAGACAGCTGA

Upstream 100 bases:

>100_bases
AAACCTCCAACCCGCAGAAAACCCCATGGTGCATTGCAAACGCGGCTCGGCCAGCCGATAAGTGGCGAAGACAATTCAAC
TTTTAACGGATTATTGCTCC

Downstream 100 bases:

>100_bases
GCTTGCGTCCGGCGAAACTTCGCGCGATTAAAAGATATATCTTTTGATCCGAAGGCTCGCCGATGACCGAAATTGCCATC
TTCACCCTGCTCCACCTTCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MAADSSLSLTADLIDETAGAPLYQQIYDLLRAKIVSGELGLNTRLPAEQELTEMLGVSRITVKRALNELAVAGFVRRQRG
IGTVITFDAAAPTVKGSFENLIDGLTRMGVETQVQLLDCTMATASPAICDTLELPHGSSVQRIVRLRRLGGEPFSYLITY
IPEDVAEGYSEDELATESLIKLLEKAGHAPVEADQTIMAEAAEAAVAANLGIAPGSPLLRIHRVMRDKSGRPVQDITAHY
RSDRFQYHMRLTRNTARQKDWKTDS

Sequences:

>Translated_265_residues
MAADSSLSLTADLIDETAGAPLYQQIYDLLRAKIVSGELGLNTRLPAEQELTEMLGVSRITVKRALNELAVAGFVRRQRG
IGTVITFDAAAPTVKGSFENLIDGLTRMGVETQVQLLDCTMATASPAICDTLELPHGSSVQRIVRLRRLGGEPFSYLITY
IPEDVAEGYSEDELATESLIKLLEKAGHAPVEADQTIMAEAAEAAVAANLGIAPGSPLLRIHRVMRDKSGRPVQDITAHY
RSDRFQYHMRLTRNTARQKDWKTDS
>Mature_264_residues
AADSSLSLTADLIDETAGAPLYQQIYDLLRAKIVSGELGLNTRLPAEQELTEMLGVSRITVKRALNELAVAGFVRRQRGI
GTVITFDAAAPTVKGSFENLIDGLTRMGVETQVQLLDCTMATASPAICDTLELPHGSSVQRIVRLRRLGGEPFSYLITYI
PEDVAEGYSEDELATESLIKLLEKAGHAPVEADQTIMAEAAEAAVAANLGIAPGSPLLRIHRVMRDKSGRPVQDITAHYR
SDRFQYHMRLTRNTARQKDWKTDS

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=232, Percent_Identity=26.2931034482759, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87082252, Length=234, Percent_Identity=26.9230769230769, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788418, Length=231, Percent_Identity=24.2424242424242, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790540, Length=210, Percent_Identity=28.0952380952381, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28978; Mature: 28847

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADSSLSLTADLIDETAGAPLYQQIYDLLRAKIVSGELGLNTRLPAEQELTEMLGVSRI
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHH
TVKRALNELAVAGFVRRQRGIGTVITFDAAAPTVKGSFENLIDGLTRMGVETQVQLLDCT
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
MATASPAICDTLELPHGSSVQRIVRLRRLGGEPFSYLITYIPEDVAEGYSEDELATESLI
HHHCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHCCCCCHHHHHHHHH
KLLEKAGHAPVEADQTIMAEAAEAAVAANLGIAPGSPLLRIHRVMRDKSGRPVQDITAHY
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
RSDRFQYHMRLTRNTARQKDWKTDS
HCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AADSSLSLTADLIDETAGAPLYQQIYDLLRAKIVSGELGLNTRLPAEQELTEMLGVSRI
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHH
TVKRALNELAVAGFVRRQRGIGTVITFDAAAPTVKGSFENLIDGLTRMGVETQVQLLDCT
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
MATASPAICDTLELPHGSSVQRIVRLRRLGGEPFSYLITYIPEDVAEGYSEDELATESLI
HHHCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHCCCCCHHHHHHHHH
KLLEKAGHAPVEADQTIMAEAAEAAVAANLGIAPGSPLLRIHRVMRDKSGRPVQDITAHY
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
RSDRFQYHMRLTRNTARQKDWKTDS
HCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]