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The map label for this gene is yqhC [H]

Identifier: 114798010

GI number: 114798010

Start: 2327850

End: 2328731

Strand: Direct

Name: yqhC [H]

Synonym: HNE_2226

Alternate gene names: 114798010

Gene position: 2327850-2328731 (Clockwise)

Preceding gene: 114800020

Following gene: 114799172

Centisome position: 62.83

GC content: 64.17

Gene sequence:

>882_bases
ATGACAGATTTGGATGCGATCAGATCCGTAGCCCTGCGCCATGCAGGACGCGGCAGCCCGGCGATGCCCCGCCTTCACCT
CTTCCGCATCGATACGCCGACCGACGCGGCTGGCCTGATCTACGATCCGGTCGTCTGTCTTGTGCTTCAGGGCACCAAAC
GCACCTTTATTGGCGATGGCGCCCTCCAATACGGGCCGGGCGAGTGCATGGTCGTCGCCGCCGAAGTCACCGCCATGGGA
CAGGTCTGTGAGGCGTCCACAGACGAACCCTATCTTGCCTTGAACCTCCTGCTGGATGCCGCCGTCATCTCGGCGGTTCT
TCTCGAGATGGATCGCCTGCCTGAAGCCCGGATCCGATCGGGCTATGGCGTCTCGAAGGCGGATCCCCGGCTGCTCGAAG
CCTGGCGGCGATTTGCCGAATTGCTTGATCGTCCCGATGAGGTTCGCGTGATGGCGGCACATCTGGAGCACGAACTGATG
TTCCGGCTCCTCATGGGGCAGCAGGGTGGCCTGCTGCGTCAGATCGCGGGCGCAGACTCCCGGCTTTCCCATATCCGGCG
CGCCATGGCCTGGGTACGCCAGCACTATGCCGAAAATTTGAGCATCGGGGCCATGGCCACCGTGGCAGGCATGAGTTCCT
CCGTATTCCACCGGCGTTTCAAGGCGGTGACGGGCGTGAGCCCGCTTCAGTACCAGAAGCACATCCGGTTGCATGAGGCG
CGCCGCCGCCTCGTGACCGAACGCGCCGAGGCCGCGACTGTCGGGTATGCCGTGGGCTATGAAAGCGCGTCGCAGTTCTC
GCGCGAGTACAAACGCTTGTTTGGCGCCCCGCCACGGCGCGACGCAGACGCCTTGCAGCCCGCGAGTAAAGACGGCCCCT
GA

Upstream 100 bases:

>100_bases
AAGCCCGACGGCGCAGCCGATGGATGCCCGATGGTCCCGGATGATTGCCTGATCCTGCCGGATGCTTGATCTTTGTTTGC
TTTCGGTGTGTCGTATCGCG

Downstream 100 bases:

>100_bases
AGTTTCAGGGACCGCCCGGTCTCACATGACAACCGCTCGCGGGTATCTGGTGGCGGTGTATCCGGGCGGGAATGCGCCCT
GCCTGGCCGCCGGACGCGGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTDLDAIRSVALRHAGRGSPAMPRLHLFRIDTPTDAAGLIYDPVVCLVLQGTKRTFIGDGALQYGPGECMVVAAEVTAMG
QVCEASTDEPYLALNLLLDAAVISAVLLEMDRLPEARIRSGYGVSKADPRLLEAWRRFAELLDRPDEVRVMAAHLEHELM
FRLLMGQQGGLLRQIAGADSRLSHIRRAMAWVRQHYAENLSIGAMATVAGMSSSVFHRRFKAVTGVSPLQYQKHIRLHEA
RRRLVTERAEAATVGYAVGYESASQFSREYKRLFGAPPRRDADALQPASKDGP

Sequences:

>Translated_293_residues
MTDLDAIRSVALRHAGRGSPAMPRLHLFRIDTPTDAAGLIYDPVVCLVLQGTKRTFIGDGALQYGPGECMVVAAEVTAMG
QVCEASTDEPYLALNLLLDAAVISAVLLEMDRLPEARIRSGYGVSKADPRLLEAWRRFAELLDRPDEVRVMAAHLEHELM
FRLLMGQQGGLLRQIAGADSRLSHIRRAMAWVRQHYAENLSIGAMATVAGMSSSVFHRRFKAVTGVSPLQYQKHIRLHEA
RRRLVTERAEAATVGYAVGYESASQFSREYKRLFGAPPRRDADALQPASKDGP
>Mature_292_residues
TDLDAIRSVALRHAGRGSPAMPRLHLFRIDTPTDAAGLIYDPVVCLVLQGTKRTFIGDGALQYGPGECMVVAAEVTAMGQ
VCEASTDEPYLALNLLLDAAVISAVLLEMDRLPEARIRSGYGVSKADPRLLEAWRRFAELLDRPDEVRVMAAHLEHELMF
RLLMGQQGGLLRQIAGADSRLSHIRRAMAWVRQHYAENLSIGAMATVAGMSSSVFHRRFKAVTGVSPLQYQKHIRLHEAR
RRLVTERAEAATVGYAVGYESASQFSREYKRLFGAPPRRDADALQPASKDGP

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=266, Percent_Identity=31.203007518797, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1790339, Length=112, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32307; Mature: 32175

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLDAIRSVALRHAGRGSPAMPRLHLFRIDTPTDAAGLIYDPVVCLVLQGTKRTFIGDG
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCC
ALQYGPGECMVVAAEVTAMGQVCEASTDEPYLALNLLLDAAVISAVLLEMDRLPEARIRS
CCEECCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
GYGVSKADPRLLEAWRRFAELLDRPDEVRVMAAHLEHELMFRLLMGQQGGLLRQIAGADS
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHH
RLSHIRRAMAWVRQHYAENLSIGAMATVAGMSSSVFHRRFKAVTGVSPLQYQKHIRLHEA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RRRLVTERAEAATVGYAVGYESASQFSREYKRLFGAPPRRDADALQPASKDGP
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCC
>Mature Secondary Structure 
TDLDAIRSVALRHAGRGSPAMPRLHLFRIDTPTDAAGLIYDPVVCLVLQGTKRTFIGDG
CCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCC
ALQYGPGECMVVAAEVTAMGQVCEASTDEPYLALNLLLDAAVISAVLLEMDRLPEARIRS
CCEECCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
GYGVSKADPRLLEAWRRFAELLDRPDEVRVMAAHLEHELMFRLLMGQQGGLLRQIAGADS
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHH
RLSHIRRAMAWVRQHYAENLSIGAMATVAGMSSSVFHRRFKAVTGVSPLQYQKHIRLHEA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RRRLVTERAEAATVGYAVGYESASQFSREYKRLFGAPPRRDADALQPASKDGP
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]