| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is purN [H]
Identifier: 114797986
GI number: 114797986
Start: 2367928
End: 2368512
Strand: Direct
Name: purN [H]
Synonym: HNE_2264
Alternate gene names: 114797986
Gene position: 2367928-2368512 (Clockwise)
Preceding gene: 114798932
Following gene: 114798803
Centisome position: 63.91
GC content: 65.64
Gene sequence:
>585_bases ATGACGCGCCTCAATCTGGCGATCCTGATTTCAGGCCGCGGCTCCAATATGGAGGCCCTGCTGAGCGCCGCCGAAGACCC GGCCTATCCGGCAAAGCCCGTTCTGGTCGCCTCCAACCGTCCCGATGCCAAGGGCCTTGAAACCGCCGCCGCTGCGGGCA TCCCCACGCTCTCCATCGACCACAAGCTCTATGGCAAGGACCGCGAAGCCTTCGAGCGCGCGCTGGACGAGGCCTTGACT AAAGCTGGCACGGAGATCATCGCGCTGGCCGGTTTCATGCGCGTGCTCACCCCTTGGTTCGTAATGCGCTGGGAAGGCCG GATGATCAACATCCACCCATCGCTCCTGCCGAAATACAAAGGCCTCGACACGCATCAGCGCGCCATCGATGCAGGCGACG CGGAAGCAGGCTGCACGGTTCACTGGGTCAGCGCCGGGGTCGATGAAGGCGAGATCATCGCGCAGGCCTCCGTGCCCATC CTGCCGGGCGACACCGCAGACACCCTCGCCGCCCGCACCCTGCCGGAAGAACACACACTCTACCCGCGCGCCCTCGCGCT GGCCTGCCAGCAAATCCGGCGCTAG
Upstream 100 bases:
>100_bases GCCTTGTTCTCGCCGTCGCGCCCGAAGAGGCAGACGCCGTGATCGCAGACCTGAAAGCGGCGGGCGAAGACGCGCGCGTT CTCGGTGAGCTTGCCAGCGC
Downstream 100 bases:
>100_bases CGCAAAGCCCCTTGCCCCGATGTGGACATGGGGGTGCCCAGCAGCTATCCCCGAAGCCATACCCAGTGCGGGTTCACCGC ACGGATTTACGGCACAGGGA
Product: phosphoribosylglycinamide formyltransferase
Products: NA
Alternate protein names: 5'-phosphoribosylglycinamide transformylase; GAR transformylase; GART [H]
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MTRLNLAILISGRGSNMEALLSAAEDPAYPAKPVLVASNRPDAKGLETAAAAGIPTLSIDHKLYGKDREAFERALDEALT KAGTEIIALAGFMRVLTPWFVMRWEGRMINIHPSLLPKYKGLDTHQRAIDAGDAEAGCTVHWVSAGVDEGEIIAQASVPI LPGDTADTLAARTLPEEHTLYPRALALACQQIRR
Sequences:
>Translated_194_residues MTRLNLAILISGRGSNMEALLSAAEDPAYPAKPVLVASNRPDAKGLETAAAAGIPTLSIDHKLYGKDREAFERALDEALT KAGTEIIALAGFMRVLTPWFVMRWEGRMINIHPSLLPKYKGLDTHQRAIDAGDAEAGCTVHWVSAGVDEGEIIAQASVPI LPGDTADTLAARTLPEEHTLYPRALALACQQIRR >Mature_193_residues TRLNLAILISGRGSNMEALLSAAEDPAYPAKPVLVASNRPDAKGLETAAAAGIPTLSIDHKLYGKDREAFERALDEALTK AGTEIIALAGFMRVLTPWFVMRWEGRMINIHPSLLPKYKGLDTHQRAIDAGDAEAGCTVHWVSAGVDEGEIIAQASVPIL PGDTADTLAARTLPEEHTLYPRALALACQQIRR
Specific function: De novo purine biosynthesis; third step. [C]
COG id: COG0299
COG function: function code F; Folate-dependent phosphoribosylglycinamide formyltransferase PurN
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GART family [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=185, Percent_Identity=46.4864864864865, Blast_Score=177, Evalue=4e-45, Organism=Homo sapiens, GI209869995, Length=185, Percent_Identity=46.4864864864865, Blast_Score=177, Evalue=4e-45, Organism=Homo sapiens, GI209869993, Length=185, Percent_Identity=46.4864864864865, Blast_Score=177, Evalue=4e-45, Organism=Escherichia coli, GI1788846, Length=183, Percent_Identity=42.6229508196721, Blast_Score=160, Evalue=5e-41, Organism=Escherichia coli, GI1787483, Length=189, Percent_Identity=28.042328042328, Blast_Score=73, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567511, Length=190, Percent_Identity=40.5263157894737, Blast_Score=145, Evalue=9e-36, Organism=Saccharomyces cerevisiae, GI6320616, Length=212, Percent_Identity=28.7735849056604, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582400, Length=187, Percent_Identity=51.3368983957219, Blast_Score=182, Evalue=9e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR001555 - InterPro: IPR004607 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =2.1.2.2 [H]
Molecular weight: Translated: 20891; Mature: 20760
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS00373 GART
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLNLAILISGRGSNMEALLSAAEDPAYPAKPVLVASNRPDAKGLETAAAAGIPTLSID CCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEC HKLYGKDREAFERALDEALTKAGTEIIALAGFMRVLTPWFVMRWEGRMINIHPSLLPKYK CHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCEEEEECHHHCCCCC GLDTHQRAIDAGDAEAGCTVHWVSAGVDEGEIIAQASVPILPGDTADTLAARTLPEEHTL CCCHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCHHCC YPRALALACQQIRR CHHHHHHHHHHHCC >Mature Secondary Structure TRLNLAILISGRGSNMEALLSAAEDPAYPAKPVLVASNRPDAKGLETAAAAGIPTLSID CCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEC HKLYGKDREAFERALDEALTKAGTEIIALAGFMRVLTPWFVMRWEGRMINIHPSLLPKYK CHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCEEEEECHHHCCCCC GLDTHQRAIDAGDAEAGCTVHWVSAGVDEGEIIAQASVPILPGDTADTLAARTLPEEHTL CCCHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCHHCC YPRALALACQQIRR CHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]