Click here to switch to the map view.

The map label for this gene is yagT [H]

Identifier: 114797803

GI number: 114797803

Start: 1080540

End: 1081190

Strand: Reverse

Name: yagT [H]

Synonym: HNE_1073

Alternate gene names: 114797803

Gene position: 1081190-1080540 (Counterclockwise)

Preceding gene: 114798789

Following gene: 114799713

Centisome position: 29.18

GC content: 64.52

Gene sequence:

>651_bases
ATGAATTCCGAAGACAGTATCAAGCCCTCGCGGCGCGATGTTATGGTCGTCGGCGCGGCAAGTTCCGCCCTGCTCGTCAA
TGCCTGCCAGTCCGCCACGCCCACCACCTATGCTGAAGAGGGACCCCCTGTCGTGAACGAGACCACCTCTACCGTCACAC
TTGAAGTCAATGGCACGCCCCACCGGCTCACGATCGACAACCGGGTCACGCTCCTCGATGCCCTGCGCGAACACCTTCGC
CTGACCGGCACCAAGAAGGGCTGCGACCACGGCCAGTGCGGCGCCTGCACCGTCATCGTCAACGGCCGGCGGATCAATTC
CTGCCTCAGCCTCGCCGTCATGCACGCAGGCGACGAGATCAAGACCGTTGAAGGGTTCGGCACGCCAGACGCGCCCGGCC
CGATGCAGGCCGCCTTCATCCGGGAAGATGCCTACCAGTGCGGCTACTGCACACCCGGCCAGATCTGCGCCGCCATCGGC
GTGCTGGAAGAAATCCGCGCCGGCGTGCCCAGCCATGTGACGCCCTCGCTGACCGGCCCCGTCGAGGCGAGCCCAGAGGA
AATCCGGGAACGGATGAGTGGCAATATCTGCCGCTGCGGCGCCTATTCCAACATCCTGTCAGCCATTCAAAGCGTTTCGG
GAGCCGTCTGA

Upstream 100 bases:

>100_bases
AGGTTTCCGGTTCGCATGGGCGCATTAAAGTACCAAACGGCGGCGCACGCACACCAGCCGCACGGATTCCGCCACGCACC
CCGCAGAGGAGAGGCCCCCC

Downstream 100 bases:

>100_bases
TGCAATCTTTCAGCTATCTGCTCGCCAGAACACCCCAGGAAGCCGCCGCCCTGGCCGCCGCCACCCCCGGCGCCAAATTC
ATCGCCGGTGGCACCAACCT

Product: putative xanthine dehydrogenase, iron-sulfur binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNSEDSIKPSRRDVMVVGAASSALLVNACQSATPTTYAEEGPPVVNETTSTVTLEVNGTPHRLTIDNRVTLLDALREHLR
LTGTKKGCDHGQCGACTVIVNGRRINSCLSLAVMHAGDEIKTVEGFGTPDAPGPMQAAFIREDAYQCGYCTPGQICAAIG
VLEEIRAGVPSHVTPSLTGPVEASPEEIRERMSGNICRCGAYSNILSAIQSVSGAV

Sequences:

>Translated_216_residues
MNSEDSIKPSRRDVMVVGAASSALLVNACQSATPTTYAEEGPPVVNETTSTVTLEVNGTPHRLTIDNRVTLLDALREHLR
LTGTKKGCDHGQCGACTVIVNGRRINSCLSLAVMHAGDEIKTVEGFGTPDAPGPMQAAFIREDAYQCGYCTPGQICAAIG
VLEEIRAGVPSHVTPSLTGPVEASPEEIRERMSGNICRCGAYSNILSAIQSVSGAV
>Mature_216_residues
MNSEDSIKPSRRDVMVVGAASSALLVNACQSATPTTYAEEGPPVVNETTSTVTLEVNGTPHRLTIDNRVTLLDALREHLR
LTGTKKGCDHGQCGACTVIVNGRRINSCLSLAVMHAGDEIKTVEGFGTPDAPGPMQAAFIREDAYQCGYCTPGQICAAIG
VLEEIRAGVPSHVTPSLTGPVEASPEEIRERMSGNICRCGAYSNILSAIQSVSGAV

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1786480, Length=165, Percent_Identity=64.8484848484848, Blast_Score=238, Evalue=2e-64,
Organism=Escherichia coli, GI1789232, Length=163, Percent_Identity=38.0368098159509, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17540638, Length=159, Percent_Identity=33.9622641509434, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17539860, Length=158, Percent_Identity=33.5443037974684, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI32566215, Length=160, Percent_Identity=32.5, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24647199, Length=171, Percent_Identity=33.9181286549708, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24647197, Length=177, Percent_Identity=32.7683615819209, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24647195, Length=177, Percent_Identity=32.7683615819209, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24647201, Length=171, Percent_Identity=32.7485380116959, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17737937, Length=179, Percent_Identity=34.6368715083799, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24647193, Length=174, Percent_Identity=31.6091954022989, Blast_Score=78, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 22670; Mature: 22670

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEDSIKPSRRDVMVVGAASSALLVNACQSATPTTYAEEGPPVVNETTSTVTLEVNGTP
CCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
HRLTIDNRVTLLDALREHLRLTGTKKGCDHGQCGACTVIVNGRRINSCLSLAVMHAGDEI
CEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCE
KTVEGFGTPDAPGPMQAAFIREDAYQCGYCTPGQICAAIGVLEEIRAGVPSHVTPSLTGP
EEEECCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VEASPEEIRERMSGNICRCGAYSNILSAIQSVSGAV
CCCCHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSEDSIKPSRRDVMVVGAASSALLVNACQSATPTTYAEEGPPVVNETTSTVTLEVNGTP
CCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
HRLTIDNRVTLLDALREHLRLTGTKKGCDHGQCGACTVIVNGRRINSCLSLAVMHAGDEI
CEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCE
KTVEGFGTPDAPGPMQAAFIREDAYQCGYCTPGQICAAIGVLEEIRAGVPSHVTPSLTGP
EEEECCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
VEASPEEIRERMSGNICRCGAYSNILSAIQSVSGAV
CCCCHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]